Lysinibacillus irui: OU989_19475
Help
Entry
OU989_19475 CDS
T09550
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
liu
Lysinibacillus irui
Pathway
liu03030
DNA replication
liu03410
Base excision repair
liu03420
Nucleotide excision repair
liu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
liu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OU989_19475 (ligA)
03410 Base excision repair
OU989_19475 (ligA)
03420 Nucleotide excision repair
OU989_19475 (ligA)
03430 Mismatch repair
OU989_19475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liu03032
]
OU989_19475 (ligA)
03400 DNA repair and recombination proteins [BR:
liu03400
]
OU989_19475 (ligA)
Enzymes [BR:
liu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OU989_19475 (ligA)
DNA replication proteins [BR:
liu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OU989_19475 (ligA)
DNA repair and recombination proteins [BR:
liu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OU989_19475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OU989_19475 (ligA)
MMR (mismatch excision repair)
DNA ligase
OU989_19475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OU989_19475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WDV06397
LinkDB
All DBs
Position
complement(3853457..3855460)
Genome browser
AA seq
667 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGHAYYVLDKPVVADSVYDQLLHELIALEEANPSLIYPDSPTQ
RVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKVRQAIGDHFSYVCELKIDGLAIS
LKYENGVFIQGATRGDGVVGEDITANLKTIRAIPLRLKEPVTIEVRGEAYMPKKSFEKLN
AQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGIDGHAEMLDY
LEGLGFPSNKERQRCSTIEEVMSFIEHWTENRPKLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRASLHNEDLIR
DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFMMPKNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYHLTVEQLVELE
RMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEEFGSMEAVMVATEDQL
VAIYEIGDKMASSLVEYFSNEDARAVIGRLAEAGVNMTYKGKKVEVAIGESPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGADAGSKLAKAEQLGIEVWNEENL
IEQLDLI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatcgaacagcgaattgcagagttaaataaattattgcacgaatatggtcat
gcctattatgtgttagataaacctgtcgtagctgatagtgtctacgatcaattattacat
gagctgattgcattagaagaagcaaatccgtcacttatttacccagattctcctacgcag
cgtgttggtggagcggtggtagagggctttaaaaaagtaacacatgattatccaatgctt
agtctttccaatgcttttaacgaagcagatttacgagaattcgatcgtaaagttcgtcag
gcgattggggaccatttttcttatgtatgtgagttgaaaatagatggtctagctatttca
cttaagtacgaaaatggtgtgtttatacaaggtgctacacgaggagatggtgtagttggg
gaagatattacagccaatttaaagacaatccgtgcgattccccttcgtttaaaggaacca
gttacgattgaagttcgtggtgaggcatatatgcctaaaaagtcttttgaaaaattaaat
gcccaacgtgctgacaatggtgaggaattgtttgccaatcctcgtaatgctgcagctggc
tcattacgccagttagaccctaaaattgcggcaagtcgccaactatcaacttttatctat
gccattggcggagacggagaagtatatggtatcgatggtcatgcggagatgcttgattat
ttggaaggcttgggcttcccttcaaataaagagcgccaacgatgctctactattgaagaa
gtaatgtcctttatagaacattggacagaaaaccgtccaaaattagcttacgagattgac
ggcattgttattaaagtggaccgttatgctcagcaagatgagctaggttatacagcaaag
agtccacgttgggcgattgcatacaaatttcccgcagaagaagttgttacaacattgctt
gatattgacttaacagtgggacgtacaggtgtagttacgccaacggctattttaacacca
gtacaagtagcagggacaacggtgcaacgtgcttccctacacaatgaagatttaattaga
gataaagatattcgtttaggggatacagtcatcattcgaaaagcaggtgatattatccca
caggtggtaggggtgctaatcgaacaacgaccagaggactccgttccatttatgatgcca
aaaaattgccctgtttgtgatagtgaattgattcgtattgaaggtgaagtagcattacgc
tgtgtaaatcctgcttgctttgctcaaattgcggaaagcataaaatattttgtttctcga
aatgccatgaacattgatggccttggagataaagtagttgagcaattattacgtgcagat
ttaatccatgatgtttctgatttatatcatctaacagttgagcaacttgttgaattagaa
cgcatgggtgaaaaatcggcaactaatttagtgaatgccatccaagcttcgaaggagaat
tctatggagcgtttattaatcggtcttggaattcgacatgttggtgaaaaagcagcaaaa
attgtatcagaggaatttggttcaatggaagcggtaatggtagcaacagaggatcagcta
gtggcaatttatgagattggtgataaaatggcgtcttcgttagtggaatatttctcaaat
gaagacgcacgcgcggttattggacgtcttgcagaggcaggcgtaaatatgacctataaa
ggtaaaaaagtagaagtggctattggggaaagtccttttgcagggaaaacaattgtttta
actggtaaacttgagcaattgacacgtaacgaagcaaaggcgaaaatagaagagttaggt
ggtactgtcacaggcagtgtcagcaaaaaaacagaccttgttatcgcgggtgcggacgca
ggctctaagctggcaaaggctgagcaattaggtattgaagtttggaatgaagaaaactta
attgaacaacttgacctcatctaa
DBGET
integrated database retrieval system
