Lichenihabitans sp. PAMC28606: LGH83_09695
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Entry
LGH83_09695 CDS
T07621
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
liz
Lichenihabitans sp. PAMC28606
Pathway
liz03030
DNA replication
liz03410
Base excision repair
liz03420
Nucleotide excision repair
liz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
liz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGH83_09695 (ligA)
03410 Base excision repair
LGH83_09695 (ligA)
03420 Nucleotide excision repair
LGH83_09695 (ligA)
03430 Mismatch repair
LGH83_09695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
liz03032
]
LGH83_09695 (ligA)
03400 DNA repair and recombination proteins [BR:
liz03400
]
LGH83_09695 (ligA)
Enzymes [BR:
liz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGH83_09695 (ligA)
DNA replication proteins [BR:
liz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGH83_09695 (ligA)
DNA repair and recombination proteins [BR:
liz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGH83_09695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGH83_09695 (ligA)
MMR (mismatch excision repair)
DNA ligase
LGH83_09695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGH83_09695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UDL96422
LinkDB
All DBs
Position
2042472..2044568
Genome browser
AA seq
698 aa
AA seq
DB search
MTDPIRTNVTEADASADHARLVAEIAGHDKAYHQDDAPTISDADYDALRRRLVALQTAFP
ALQPPPDERVGAAPSEKFAKVRHKVPMLSLGNVFADDEVTDFVARVRRFLGLAADAPLPI
TAEPKIDGLSCALRYEQGVLVLAATRGDGYEGEDVTANIRTVKAIPKRLTGRNVPPVCEV
RGEIFLTKEDFAALNHRQAEAGKPTFANPRNSAAGSLRQLDPAITADRPLKFFAYAWGEM
TSLPAPTQSGMVAAFRRWGLPTNPLTAVCASADDLIAHYRAIETQRATLPYDIDGVVYKV
DDLALQGRLGFVSRAPRWAVAHKFPAERATTRLEAIDIQVGRTGSLTPVARLHPVTVGGV
VVVNATLHNEDEIARKDVRIGDIVAVQRAGDVIPQIIGPILTKGEARGEPFDFPKTCPAC
GSAALQEIDPKTGVADVVRRCTGGLICPAQAVERLKHFCSRNALDIEGLGDKQIELFYGE
GLIRTPADIFTLATRDKASLTSLSERPGFGKTSVKNLFAAIDERRRIPVNRFIYALGIRH
VGETNARRLARHCGSFDALRALAASAIEPGSEAWAELRDIEGLGDVVAQALADFFAEPHN
QTVVDALLAEVTPEPMEAVASQSPVAGKTIVFTGGLEKMTREEAKARAEALGAKVSGSVS
RKTTLVVAGPGAGSKLAKAAEFGIEVISEDDWIALASG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgatccggacaaatgtgaccgaagccgacgccagcgcggaccatgcgcgg
ctggtggccgagatcgcggggcacgacaaagcctatcatcaggacgacgcgccgacgatc
tcggacgcggattacgatgctttgcgccgccgccttgtcgcattgcagaccgcatttccg
gccttgcagccgccgcccgacgagcgggttggtgcagcgccgtcggaaaaatttgccaag
gttcgccataaagttccgatgctgtcgctcggcaacgtcttcgcggacgacgaggtgacg
gattttgtggcgcgcgttcgccgctttctcggtctcgcagcggacgcaccgcttccgatc
acggccgagccgaagatcgacggactgtcttgcgccttgcgctacgaacagggtgtgctg
gttctggcggccacccggggcgacggatatgagggcgaggatgtcacggccaatatccga
accgttaaggcgatccccaagcggctgacgggtcgcaacgtcccacccgtctgcgaagtg
cgtggcgagatcttcctgaccaaggaggattttgcggccttgaaccaccgccaggccgag
gccggcaagcccaccttcgccaatccgcgcaattcggccgcaggctcgctgcgccaactc
gatcccgcgatcacggcggaccgaccgctcaaattcttcgcctatgcctggggcgaaatg
acgtcgcttcccgccccgacccagagcggcatggtggcggcctttcgccgatggggtctg
ccgaccaatccgctgacggcggtttgcgcctccgccgacgacctcatcgcgcattatcgg
gccatcgaaacccagcgtgcgacgctgccctatgacatcgatggcgtcgtctacaaggtc
gacgatctcgccctgcaaggccggctcggcttcgtgtcgcgcgcaccgcgctgggcggtt
gcgcataaatttccggcggagcgcgccacgacgcggcttgaggcgatcgacatccaggtc
ggccgcactggctctctgacgccggtcgcccggctacaccccgtgacggtcggcggtgtc
gtggtggtgaatgccacgctgcataacgaggatgagatcgctcgcaaggatgtgcggatc
ggcgacatcgtcgcggtgcagcgggccggcgacgtcatcccgcagatcatcggacctatc
ctgaccaagggcgaggcgcgcggcgagccgttcgacttccccaaaacctgcccggcttgc
ggttcggccgccttgcaagagatcgacccgaaaacgggggtcgccgacgttgtccgccgc
tgcacggggggcttgatctgcccggcccaggcggtcgagcgtctgaaacacttctgttcc
cggaacgcgctcgacatcgaagggctcggcgacaagcagatcgaactcttctacggcgaa
ggactgatccgcacgccggccgacatcttcactctggcgacacgcgacaaggcgtctctc
actagcctgtcggagcggccgggcttcggcaagacctcggtcaagaacctgtttgcggcc
atcgacgagcgtcggcgcattccggtcaatcgtttcatctatgcgctcggaatccgccac
gtcggtgagaccaacgcccggcggctggcgcggcactgcggcagcttcgatgcacttcgt
gccttggccgcgagcgccatcgagccgggctcggaggcatgggcagaattgcgcgatatc
gaggggctgggcgacgtggtggcgcaagccctggccgactttttcgccgagccgcataat
caaaccgtggtcgatgcgctcctggccgaagtaacccccgagccgatggaagctgtcgcc
tcgcaaagcccggtggcgggcaagacgatcgtgttcaccggcggcctcgaaaagatgacg
cgcgaggaagccaaagcgcgcgccgaagcgctgggcgcgaaagtctcagggtcggtatcc
agaaaaaccacgctggtggtagccggtccgggtgcgggctcgaaactcgccaaggcggcg
gaattcggcattgaggtcatcagcgaagatgattggatcgcgctggcgtcgggatga
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