Lotus japonicus: 130714645
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Entry
130714645 CDS
T04348
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130714645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130714645
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130714645
Complex C
U5 SnRNP specific factors
130714645
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
MMR_HSR1
EFG_III
Roc
EF-G_D2
Dynamin_N
Ras
Septin
SRPRB
Motif
Other DBs
NCBI-GeneID:
130714645
NCBI-ProteinID:
XP_057420548
LinkDB
All DBs
Position
4:complement(65338689..65344035)
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AA seq
989 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQDSDREPSDDEQPSDADTAQPSDGEAPATNGWITASGDPN
DVDMVDNQVVLAEDKKYYPTAEEVFGEDVETLVMDEDEQPLEQPIIKPVRKMKFEVGVKD
SSTYVSSQFLLGLMSNPSLARNVALVGHLQHGKTVFMDMLVEQTHHMSTFDSQSEKHLRY
TDTRIDEQERRISIKAVPMTMVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVL
VVDAAEGVMVNTERAIRHAIQERLPIVVVLNKVDRIITELKLPPKDAYHKIRHTLEVINT
HISAASSTAGDVQVIDPVAGNVCFASGTAGWSFTLQSFAKLYGKLHGVPLEPNKFASRLW
GDYYFHPDTRTFKKKPPVSGGERSFVEFVLEPLYKIYSQVIGEHKKSVETTLAELGVTLS
NAAYRLNVRPLLRLACSSVFGQASGFTDMLVQHIPSPRDAAVKKVDHIYTGLKDSSIYKA
MTQCDSSGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPDDEEDMTV
KEVTKLWVYQARDRMPISEAPPGSWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLLFNT
LSVVKTATEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGV
VSTDWNRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLNRGSGQIIPTARRVAYSSFLMAT
PRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYLVKAFLPVIESFGFE
TDLRYHTQGQAFCVSVFDHWAIVPGDPLDKGIVLRPLEPAPIQHLAREFMVKTRRRKGMS
EDVSISKFFDEAMMVELAQQEADLHQQMM
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggacgatagcttgtacgacgagttcggcaactacatcggacccgaaatcgagtccgac
caagactccgacagagaaccttccgacgacgaacagccttccgacgccgacaccgcccaa
ccttccgacggcgaggctcccgccaccaatggctggatcaccgcatccggcgaccccaac
gacgtcgacatggtcgacaaccaggtggtcctggcggaggacaagaagtactaccccacc
gccgaagaagtcttcggcgaagatgtggaaaccctagtcatggatgaagatgaacagcca
ctggagcaacccattatcaagcctgtgaggaagatgaagttcgaggttggcgtgaaggat
tcgtcaacctacgtttcgtcacaatttcttctgggtctcatgtcgaacccttcgttggct
aggaatgtggctcttgtggggcacttgcagcatgggaagacggtgttcatggatatgctg
gtggagcagactcaccatatgtccacgtttgattcacagagtgagaagcatttgcggtat
actgatacgaggattgatgaacaggagaggaggatttcgatcaaggctgtgcccatgacg
atggtgctggaggatagtaactccaagtcgtatttgtgtaatattatggatactcctggc
catgttaacttctccgatgaaatgaccgccgctttgaggctcgctgatggtgctgttttg
gtcgttgatgctgctgagggagtgatggtaaacactgagagagcaattcgccatgcgatt
caggagcgactgcccattgttgttgtactcaataaggttgacaggatcataactgaactt
aaactacccccaaaagatgcttatcataaaataaggcatactttggaagtcattaacact
cacatatctgctgcctcctcgactgcgggtgatgtccaagttatagatccagttgctggg
aatgtttgttttgcaagtggcactgctgggtggtcttttacattgcaatcatttgctaaa
ttgtatgggaagctacatggagttcctttggagcctaataaatttgcttctcgcctttgg
ggagactactattttcatcctgataccagaaccttcaaaaagaaaccccctgtcagtgga
ggagaacgatcttttgttgagtttgtactggagccgctttacaagatatatagccaagta
attggggagcataagaaaagtgtggagacaactctagcagaacttggagttactctaagt
aatgcagcttatagattaaatgttagaccattgctaaggctggcttgtagctctgttttt
ggtcaagcttcaggtttcactgatatgcttgttcagcatataccttccccgagagatgcc
gcagtaaagaaagttgatcatatatataccggactgaaagactcatccatctacaaagcc
atgacacagtgtgattcttcagggcccctaatggttaatgtgaccaagctgtatccaaag
tctgattgtagtgtctttgatgcttttggtcgagtttatagtggcaagatacagactgga
cagacagtacgtgttctgggagaaggatactcaccggatgatgaggaggacatgactgta
aaagaagtaactaagttgtgggtatatcaagcccgtgataggatgccaatatcggaggct
cctccaggttcttgggttcttattgaaggtgtggatgcttcaatcatgaaaaccgccact
ctatgtaatgtcgattatgatgaggatgtatacatattccgccctctcctgttcaatact
ctgtcagtggtgaaaacagcgactgagccattaaatccaagcgagttgcctaaaatggtg
gagggcctgaggaaaattagcaagagttatcctttagcggttactaaagttgaggagtct
ggggagcacactatactagggactggcgagctgtacttggattcaattatgaaggaccta
agagagctctattctgaagtcgaagtcaaggtagcagatcctgtagtttcgttttgtgaa
actgttgttgaatcttcatcaatgaaatgttttgctgaaacaccaaacaagaagaataaa
ataacaatgattgctgagccactagaaagaggtcttgctgaagacatagagaatggtgtt
gttagcactgactggaatagaaagaaactgggtgaatttttccagactaaatatgactgg
gatcttcttgctgcgcgatcaatctgggcatttggccctgataagcagggccccaatatt
ctgttggacgacacccttccaactgaagttgacaagaacctgctaaatgctgttaaggac
tccattgttcagggatttcaatggggtgcacgagaaggacctctttgcgatgagcccatc
agaaatgttaagtttaagattgttgatgcaaggattgccccagagccacttaatcgggga
tctggccaaatcattccaactgctcgacgagtggcttattcatctttccttatggctacc
cctaggttaatggaaccagtatattatgtagagattcaaactccaatagattgtgtatct
gcgatctacactgtattgtctcgtaggcgtggacatgttactgctgatgttcctcaacca
ggcacccctgcttatttagttaaggcatttttacccgtgatagaatcttttggttttgag
actgacttgagataccatacacaaggtcaagcattttgcgtctcagtttttgatcattgg
gctattgttcctggtgatcctttggacaaaggcattgttttgcgtccccttgaaccggca
ccaatccagcatcttgcccgtgagtttatggtaaagacaaggcgtagaaagggaatgagt
gaggatgtgagcataagtaagttctttgatgaggctatgatggtggaactggcacagcaa
gaggcagatcttcatcaacagatgatgtga
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