Lotus japonicus: 130717612
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Entry
130717612 CDS
T04348
Name
(RefSeq) ABC transporter I family member 21-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130717612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130717612
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130717612
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA
NACHT
AAA_23
AAA_15
AAA_24
AAA_5
Arf
AAA_18
PduV-EutP
G-alpha
AAA_25
AAA_30
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
130717612
NCBI-ProteinID:
XP_057423897
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Position
5:complement(40582637..40587620)
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AA seq
287 aa
AA seq
DB search
MAIQDSERSGGGGIRVQGMQFTYPGQQPPLFLDFHLDVSPGSRCLLLGANGSGKTTLLKI
LAGKHMVGGRDVVRVLNGSAFHDTQLVCSGDLSYLGGSWSKTIGCAGEIPLQGDFSAEHM
IFGVEGADPDRRDRLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDL
DVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATHLAYIQEGELKRTEKISDVNEL
KSSANLLSVVESWLRAETKLEKKNPTSNVQKTSSSPFFSSRHMAYYR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggccatacaagattcagaacgttccggcggaggaggaatccgagtccagggcatgcaa
ttcacctacccaggccaacaaccaccgctcttcctcgacttccacctcgacgtctctccc
ggatcgcgatgtctcctcctcggcgccaacggatccggtaaaaccaccttgctcaagatt
ctcgccgggaaacacatggttggaggcagagacgttgtccgcgtgctcaatggttccgct
tttcatgacactcagcttgtttgtagcggtgatctctcttatctcggtggatcctggagt
aaaaccattggctgcgctggagaaattccacttcaaggagacttttctgctgagcatatg
atctttggagttgagggcgctgatcctgaccggagagataggttgattgagctgcttgat
atagatctgcagtggcgaatgcataaggtatctgatgggcagcgacgtcgagtacaaatc
tgccttggtcttctccatccatataaggttctcttgctggatgaggtgactgttgacctg
gatgttgttactcggatggatttattggatttttttaaggaagagtgtgaacagagagaa
gctacaattgtttatgcaactcacatttttgatggactagagacatgggcaactcatttg
gcatatatacaagagggtgaactgaagagaacagaaaaaatatcagatgtgaacgagttg
aagtcttcagctaatctgctgtctgttgttgagtcttggctacgcgccgaaacaaagctt
gaaaagaagaaccctacttccaacgttcaaaaaacttctagctctccgttcttttcatct
agacacatggcatactatcgatag
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