Lotus japonicus: 130718188
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Entry
130718188 CDS
T04348
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130718188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130718188
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130718188
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
Arf
AAA
AAA_23
AAA_30
ATP-synt_ab
nSTAND3
AAA_28
Zeta_toxin
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
130718188
NCBI-ProteinID:
XP_057424687
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Position
5:53993444..53996725
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AA seq
331 aa
AA seq
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MSINGNSVTDATVVIRDLRFTYPGIDGHPPPGSTPLIQDFCLTLHSGDRCLLVGSNGAGK
TTILKILGGKHMVEPEMVRVLGRSAFHDTGLSSSGDLCYLGGEWRRDVAFAGFGVSIQMD
ISAEKMIFGVGGINPERRAELIKVLGIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLD
EITVDLDVLARADLLSFLKKECDERGATIIYATHIFDGLEDWPTHMVYVAHGKLQLAMPM
DKVKENSKLSLMRTVESWLRKERDEDRRKRKERKDAGLPEFEKQVEGSRVAGGDPGRAAV
RAVNNGWAAGRLHSTIAGEENFLLSSNRVLR
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcaatggcaattcagttacagatgcaacggttgtgatcagagatctgagattc
acataccctggcatcgacggccatccaccgccgggttcaactccgctcattcaagacttc
tgcctcactctccattccggcgatcgctgccttctcgtcggatccaatggcgctgggaag
acgacgatcctgaagatattgggagggaaacacatggtggagccggaaatggttcgtgtg
ctcggaagatcggcttttcacgataccggtttgtcgtcttctggtgatctctgttatctt
ggtggtgagtggaggcgggatgttgcttttgcaggttttggggtttcgattcaaatggac
atttctgcagagaaaatgatatttggtgtaggtgggattaacccagaaagaagagcggag
ctaattaaggtattaggtatcgatctttcctggagattgcataaagtatctgatggtcaa
agaagaagagtgcaaatttgtatgggtctacttaaaccattcaaggttcttcttctggat
gagataacagttgaccttgatgttctagcgagagctgatcttctgagttttctaaaaaag
gaatgtgacgagaggggtgccactattatctatgcaactcacatatttgacggtcttgaa
gattggcccacacatatggtttatgtagcccacggaaagctccaactagctatgcctatg
gacaaagtcaaagaaaatagcaaattgtcactgatgagaacagtagaaagttggctgagg
aaagaacgagatgaagatagaagaaaaagaaaagagaggaaggatgctggccttcctgaa
tttgaaaagcaagttgagggaagccgtgtagcaggaggggatccagggcgtgctgctgtt
cgagcagtgaataatggctgggcagcaggacgattgcattccaccattgctggtgaagaa
aactttctactaagctctaaccgagtattgagatag
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