Lotus japonicus: 130718768
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Entry
130718768 CDS
T04348
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
lja
Lotus japonicus
Pathway
lja04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
130718768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130718768
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
130718768
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
130718768
NCBI-ProteinID:
XP_057425375
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All DBs
Position
5:complement(52030375..52040759)
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AA seq
944 aa
AA seq
DB search
MGVPAFYRWLADRYPLSISDVLEDEPAVVGDGVHLPIDLTKPNPNGMEFDNLYLDMNGIV
HPCFHPDGKPAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKEAAEAEAEEERLRKEFEGEGNLLSPKEKTETSDSNVITPGTQFMAALSVALQYYVQ
SRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAADCRGKPDTKTEDWNRADDIPIHKK
KYQFLNIWVLREYLQYELEIPNPPFEIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHIYRKEFTAVGGYLTHAGEVCLDRLEHFIQSVAVHEDQIFQKRVRVQQVMENNQE
MRARARGVMPEEPRASLVDKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEGL
CWVCQYYYNGVSSWKWYYPYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQLMGVLPALSS
NALPKKYRDLMTDSSPILHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIEDT
LTEEEQLRNSVMLDLLYVNRAHDLAPHILLYCKAYSQSPSHERCVSPIATNASSGGMNGY
LWLCERNVFSSIVSSPINGLQDLESNQVLNITYLHPSRHRHIPELPDGVVIPEKIIKAID
IKPVPVLWHEDNVGRQQQSRQRLQVPGAIAGPQLGDAAHRLVKNTLNIKLNNTSRGFLEQ
PPAHHTTNRFRAAGPSRYERYDGENTNGYYGQPNHHGVMARPRYPFTSNGGQNDRHNFRT
QFRSQHQEQSYNVKAGFSALTMEEGVRPRSSRLPNSGPINLEPRFVQNMGRPVPPPKWIT
KAPPANEMYSRHQEAASGAVPYDKQTKAYQVKKQEPQDTPDCGN
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgccgaccgctacccgctctcgatctccgat
gtactggaggacgaacccgccgtcgtcggcgacggcgttcacctcccaatcgacctgaca
aaacccaaccccaacggcatggagttcgacaacctgtacctggacatgaacggcatcgtt
cacccttgttttcaccctgatggcaagccagcacctgctacctatgatgatgtgttcaaa
tccatatttgactatgttgaccatctcttctcgttggttcgtccaaggaagcttctctac
cttgcaattgatggtgttgcgccgagggccaaaatgaatcagcaacgttctcggcgtttc
cgtgctgccaaggaggcagctgaggctgaagctgaagaggaaaggctcaggaaagaattt
gagggcgagggaaatcttttatcgcctaaagaaaagactgagacttcagactcaaatgtc
attacccctggaactcaatttatggcagcactgtcggtggctcttcagtattatgtacaa
tctagattgaaccacaaccctggctggcagaaaataaaggttatacttactgattcaaat
gcacctggtgagggagagcataaaataatggaatacatccggttacaacgaaaccttccc
ggtttcaatccaaatactcgacattgtttgtatggattggatgctgatttgattatgctc
tccttagctacacatgaggttcatttttcaatattgagggaggtaatcactttaccagga
caacaggataagtgtttttcttgtggccaagttggccatttcgccgctgattgtcggggt
aagccagacactaaaactgaggactggaatcgtgctgatgatatcccaattcacaagaaa
aagtatcagtttcttaacatctgggtgctgcgtgaatatttgcaatatgaattggagatt
cccaaccctccttttgaaatcgactttgaacgagtagtggatgattttgtatttctttgc
ttctttgttggcaatgactttcttccacatatgccaaccctagagatcagggagggagct
ataaatttattgatgcatatatatagaaaggaatttactgctgtggggggctatcttact
catgcgggtgaggtttgcttggatagattggaacattttatccagtccgttgctgttcac
gaagatcaaatctttcagaaacgagttcgagttcagcaggttatggaaaataatcaagag
atgagagctagggcaagaggagtaatgcctgaagagccacgagcctcacttgtggataag
gttaagttaggggatcctggatacaaggacaggtattatgttgaaaagtttggtgtgtca
agtcagaaggagattgataaaattaagaaggatatagtcttgaaatatgtggaaggcctt
tgttgggtttgccagtattattataatggtgtaagctcatggaaatggtactacccatat
cattatgctccctttgcttctgatcttaaagatctacctgatctagaaatacatttcttt
cggggagagccatttaaaccatttgatcagctcatgggggtcctacctgctttaagttca
aatgcactgcctaaaaaatatagggatttgatgactgattcttcaccaattttacacttc
taccctgctgatttcgagattgatatgaatggaaaacgatttgcatggcagggtgttgcc
aaattgccgttcattgatgagaagaaattgcttgctgccacaaggaagattgaagacaca
ttaacggaggaagaacagcttcggaatagtgtgatgcttgatttgctttatgtcaaccgg
gcgcatgatttggctcctcatattttattgtactgcaaagcttatagtcagtcaccctca
catgaaagatgtgtttctccaattgccacaaatgctagcagtggtgggatgaatggatat
ctttggttatgtgagagaaatgttttcagcagtattgtatcttctcccatcaatggattg
caagatctcgagtctaatcaagtcttaaatattacatatcttcatcctagtagacataga
catatccctgaacttccagatggtgtagtaatacccgaaaagataataaaagccattgat
atcaaacctgttcctgtgctatggcatgaagacaatgttggtcggcaacagcaaagcaga
caaaggctgcaagtacctggagcaattgctggacctcaactaggagatgcagctcatcgt
cttgtcaaaaacacccttaacatcaaattgaataatacttcacgtggatttttggagcaa
cctccagcccaccatacaacgaacagattccgggcagctggaccctctagatatgaaaga
tatgatggcgagaacacaaatggttattatggacaacctaatcaccatggtgttatggct
agacctagatatccattcacatctaatggtggacagaacgacagacacaattttaggaca
caatttaggtcacagcatcaagaacagtcttacaatgtgaaggctgggttttctgcttta
acaatggaagaaggagtgagacctaggtcatcgaggcttccaaattctggaccaatcaat
ttagaaccccgatttgtgcagaacatgggtcgtccagtaccacctccaaagtggattact
aaagcaccgcctgcgaatgaaatgtacagtaggcatcaagaagctgcatcgggggcagta
ccttatgataagcagacaaaggcttaccaagttaaaaaacaggagccccaagatactcct
gattgtgggaattga
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