Lotus japonicus: 130719913
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Entry
130719913 CDS
T04348
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130719913
09123 Folding, sorting and degradation
03018 RNA degradation
130719913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130719913
03041 Spliceosome [BR:
lja03041
]
130719913
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130719913
mRNA degradation factors
5'-3' decay
Lsm complex
130719913
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130719913
Complex C
U2 snRNP components
130719913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
130719913
NCBI-ProteinID:
XP_057426493
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All DBs
Position
1:complement(113801273..113802778)
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AA seq
95 aa
AA seq
DB search
MEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEID
DETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaaagcgcggtgaaggagcctttggatctcattcggctcagcctcgacgag
cgtatctacgtcaagcttcgttctgacagagagcttcgcggcaagcttcatgcttatgat
cagcatctcaatatgattcttggtgatgttgaagaaattgttactactgtggaaatcgat
gatgagacatatgaagaaattgtgaggactacaaggcgtacagttcctttcctgtttgtt
agaggagatggggtgatattggtttccccaccactgagaactgcatga
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