Lotus japonicus: 130731242
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Entry
130731242 CDS
T04348
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
lja
Lotus japonicus
Pathway
lja04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
130731242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130731242
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
130731242
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
130731242
NCBI-ProteinID:
XP_057439451
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All DBs
Position
1:135073374..135081334
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVVEEEPSAAGVPFPVDVSKPNPNGMEFDNLYLDMNGIIHP
CFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSRRFRA
AKDAAEAEAEKERLRQEFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYIQTR
LNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIMLSL
ATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEKAEDWNPVDDTPIHKKKY
QFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIREGAVN
LLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQATENNEERR
ARERGEMPEGPRASVLDKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEGLCW
VCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSA
LPEKYRDLMIDPSSPILQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLEGTL
TEEEQLRNSVMLDFLYVSGAHYLAPYILWYYQHYSHLPLHQRPALPIDSNASSGGMNGYL
WLYERNVLRTVVSSPIKGLQDVERNQVLNITYLNPLKHSHIPKPPHGVVMPKKIVKAFDI
KPSPALWHEEFGGRRQQGRERQEVPGAIAGPQLGEAAHRLVKNSLNVKLNNTAYGMVEPN
PMNRLRPAGASGSGKYYGDDTGGGYYGHQYYNQQGMITRPRYNGGQNDRQNFRIQERSQY
HEQFHNMKTGFSALTMNEGVRPRSSAVPSPRGPPMILSRVPNSGHTAQQQFVQNTGPPIP
PPNWITRAPDTNGIYPTYQEAALGAAYDKHAKVYQVKTRQPQDMPEYGNR
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccagcgttttaccggtggctcgcggaccggtaccctctctcgatcgccgac
gtcgtggaggaagaaccctccgccgccggtgttccgttccccgttgacgtgtcgaaacct
aatcccaacggcatggagttcgacaacttgtacttggacatgaacggcatcatccaccct
tgttttcaccctgatggcaagcaagcacctgctacctatgatgatgttttcagatcaatg
tttgactacattgaccatctcttcgcattggttcgccctaggaagcttctttatcttgca
attgatggtgttgcaccacgagctaaaatgaatcagcaacgttctaggcgttttcgagct
gcaaaagatgctgctgaggctgaagctgaaaaggaaaggcttaggcaagaatttgagggt
gagatggaacttttgccttccctagacaagcctgagacttatgactcaaatgtcattacc
cctggcactccatttatggcagtgctgtcagtggctcttcagtattacatacaaactaga
ttgaacaacaaccctggctggcggcatacaaaggttatactttctgattcaaatgttcct
ggtgagggagaacataaaataatggaatatattcgattacaacgtaaccttccgggtttc
aatccaaatactcgacactgtttgtatggattggatgctgatttgattatgttatcctta
gctacacacgaggttcatttctcaatattgagggaggtaattactttacctggacaacaa
gagaagtgttttcaatgtggccaagctggccatcttgcagctgagtgtcgtggtaaacca
ggtgaaaaagctgaggactggaatcccgttgatgataccccaattcacaagaagaaatac
cagtttctcaacatctgggtgctgcgtgaatatctgcaatatgaattggaaattcccaat
cctccttttgagattgactttgagcgcataatagatgattttgtatttatgtgcttcttt
gttggcaatgactttcttccacatatgccaacattagagataagagagggggctgttaat
ctattgatgcatatttatagaaaagaattcacttccatgggtggttacctcactgatgcg
ggtgaggtttccctagagagagtggaacatttcattcaagccgttgctattcatgaagat
caaatatttcagaaacgagttcggattcagcaggctacagaaaataatgaagagaggaga
gccagggaaagaggagaaatgcctgaaggaccacgagcctcagttttggataaggttaag
ttagaccagcctggatacaaggaaaggtattacgttgaaaaatttggtgcattggaactg
ggagagattgacaaaattaagaaagatacagtcttgaattatgtggaaggcctttgttgg
gtttgccggtattactaccagggtgtatgttcatggcaatggtactacccatatcattat
gccccttttgcttctgatcttaaagatctagcagatctagaaataacgtttttcttggga
gaaccatttaaaccatttgatcagctcatggggaccctaccggcttcaagttcaagtgca
ctgcctgaaaagtatagggatttgatgattgatccttcatcgcctattttacaattctat
ccttctgattttgagattgatatgaatggcaaacgatttgcatggcagggtgttgccaag
ctgccgttcattaatgagaagaaattgcttgctgccacaaggaagctcgaaggcacatta
acggaggaggaacagcttcggaatagtgtgatgcttgattttctttatgttagtggtgct
cattatcttgccccatatatcttatggtattaccaacattatagtcatttgcctctgcat
caaagacctgctctgccaattgactcaaatgctagcagcggtggtatgaatggatatctt
tggttgtatgaaagaaatgtgctcagaaccgttgtgtcttctcccatcaagggattgcaa
gatgttgagcgcaatcaagttttaaatattacttatcttaatcctcttaaacatagccac
atcccaaaacctccgcatggtgtagtaatgcccaaaaagatagtaaaagcctttgatatt
aaaccttcacctgctctatggcatgaagaatttggtggtcgacgacagcaagggagagaa
agacaagaagtacctggagcaatagctggccctcaactgggagaagcagcacatcgtctt
gtcaaaaactccctgaatgtgaaattaaataacacagcctatggaatggtggagcctaat
ccaatgaaccggctcagaccagctggagcgtctggatccggaaaatattacggcgacgat
acaggtggtggttattatggacaccagtattacaatcaacaaggcatgataactaggccg
agatataatggtgggcaaaatgacagacagaattttaggatacaagaaaggtcacagtat
catgaacagttccacaacatgaaaactgggttttctgctttgactatgaatgaaggagtg
agacctaggtcatctgcagtgccttcaccaaggggacctccaatgatactatcgagggtg
ccaaattcagggcacacagcacaacaacaatttgtgcagaacacgggtcctccgatacca
cctccaaattggatcactagagccccggatacgaatggaatataccctacgtatcaagaa
gctgcattgggggcagcttatgataagcacgcgaaggtgtaccaagttaaaacccgccaa
ccccaagacatgccagagtatgggaatcggtag
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