Lotus japonicus: 130747041
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Entry
130747041 CDS
T04348
Name
(RefSeq) DNA repair protein RAD16 isoform X1
KO
K15083
DNA repair protein RAD16
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lja03400
]
130747041
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
130747041
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4_2
ResIII
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-RING_2
Prok-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130747041
NCBI-ProteinID:
XP_057455842
LinkDB
All DBs
Position
3:88335424..88344364
Genome browser
AA seq
901 aa
AA seq
DB search
MELRSRRRLSTTAAVSAEKEKQQEDEKQPEEVETNGQCSTGAADDDDEVFDVPSDPEDED
FEGMLLVLKDQTSSISGSDGEDNASDSFDGSKSLSKRGKAQSRRKRRKVNLEIGEPSGVE
SMVELEDDEHSMVFHQEVPVNLINVKNKKKARKSRKEDAGKLLLWHAWEDEQERWITENL
SEDVDLDQHSELMNESAEAPSDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKT
IQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTL
KGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNK
LSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKW
SRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYY
LCKDCDCRTLDHSSSKQCSNCSHSSVRHFCWWNKYIATPIQSYGCGDSGKRAMILLKNKI
LKSIVLRRTKLGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYIQANTLM
NNYAHIFDLLTRLRQAVDHPYLVVYSPSAASKVGNLASNGNGNVEQACGLCHDAVEDPVV
TSCEHTFCKGCLIDFSSSLEQISCPSCSKLLTVDLKSNKDLVVNTKTTIKGFRSSSILNR
IQLENFQTSTKIEALREEIRFMVESDGSAKGIVFSQFTSFLDLINYSLNKSGVNCVQLNG
SMTLAARDAAIKRFTDDPDCRIFLMSLKAGGIALNLTVASHVFLMDPWWNPAVERQAQDR
IHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLRFLFV
T
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggagcttcgttcccgtcggcgactctccaccaccgcggcggtttccgcagagaaggag
aagcagcaggaggatgagaagcagcctgaggaagttgaaactaatggccagtgcagtact
ggtgctgctgatgacgatgacgaagtttttgatgtaccttccgatcctgaagatgaagac
tttgaggggatgcttttagtcttgaaggatcaaacttcaagcattagtggttctgatgga
gaagataatgcttctgattcatttgatggtagcaagtctttatctaaaagagggaaggcg
cagtccagaagaaaaaggcgaaaagttaacttggaaattggagaaccgagtggtgtagag
agcatggtggagcttgaggatgatgaacattcaatggttttccatcaagaagtccccgtc
aatttgattaatgtgaaaaataagaaaaaggcaagaaaatcaagaaaggaagatgctggg
aaactgttgttatggcatgcttgggaagacgagcaagagagatggattactgagaatttg
tcagaagatgttgatttagatcagcacagtgaactgatgaatgaaagtgctgaggcaccg
tctgatcttactatgcctttgctacggtatcaaagggaatggttagcatgggctttgaaa
caagaaagttctgcgactagaggaggaatccttgctgacgaaatgggaatggggaagact
attcaagcaattgcccttgtccttgccaaacgtgagttctatccgataggttgtgaacca
gatgaaccctcagcttcaccagggtcatctagagtcttgcctttaattaaagcaacactt
gtcatttgtcctgtggttgctgtcactcagtgggttaatgagattaaccgatttactttg
aaaggaagcaccaaggtgctggtttatcatggggcaaagcgagggaagagtggtgaacat
tttggggagtatgattttgtaataactacatactctattgttgagtctgagtacagaaag
catatgatgcctcctaagaagaagtgcccatattgtggaaaattattttaccataacaag
ttatcttttcaccagacgtatttttgtgggcctaccgctattaaaacagaaaaacaatca
aagcaaagtaggaaaaaggaactagatgcctttacaaagaagctcaaagaaccaaggatc
acaaatgaagactcagatgcagtaggccaggagaagtcatttctacatgctgtaaagtgg
tcgaggatcatattggatgaggcacactatataaaatctagacattgtaacactgcaaag
gcagttcttgctttagagtcttcctacagatgggcattaagtggcacaccacttcagaac
cgtgtcggagagctatattctctggtacggtttctgcaaattgttccttattcttattat
ttgtgcaaggattgtgattgcaggacacttgaccatagctcctctaaacaatgttcaaac
tgctcgcacagttctgttagacatttctgttggtggaataaatatattgccacaccaatt
caatcatatggatgtggtgattctggaaaaagagctatgatattgcttaagaacaagatt
ttgaagagcatagttttaagacgaactaaactaggcagggctgctgatcttgcacttccg
cctagaattgtttcattgaggagggatagcctggatataaaggagcaagactattatgaa
tcattatacaatgagagtcaggcacagttcaatacatatattcaagcaaatactctgatg
aataattatgctcatatatttgacctcctcacacggctacgtcaggctgttgatcatcca
tatcttgtggtatattctccatctgcagcatcaaaagttgggaacttggctagcaatggt
aatggtaatgttgaacaggcatgtggcctttgtcatgatgcagttgaagatcctgtggtt
acctcgtgtgagcatactttttgcaagggttgcttgatagacttctcttcttccttggaa
caaatatcatgcccctcgtgctctaaattacttacagttgatttaaaatccaacaaggat
ttggtggtgaatactaaaaccacaattaagggtttcagatcctcaagcattttgaacaga
attcagctcgagaacttccagacaagtactaaaatagaggcgttgagagaagaaattaga
tttatggttgaaagtgatggttctgcaaaaggaattgtttttagccagttcacgtcattc
ttggatctcataaactactccctgaacaagtcaggtgtaaattgcgttcaattgaatgga
agcatgacattggctgctcgtgatgctgccattaaaagatttactgatgatccagactgc
agaatttttctcatgagcttgaaggcaggcggtattgctctcaatttgactgtagcatca
catgtcttccttatggacccttggtggaaccctgcggtggaacgtcaagctcaagataga
attcaccggatagggcaatacaaaccaatcagaattgtaagatttgtcattgaaaacact
atcgaggagaggatcttgaaacttcaagagaagaaggaactagtgtttgaagggactgtt
ggtggctcttctgaggctctggggaaattgacggaggccgacttgagatttctctttgtc
acctaa
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