Lactobacillus johnsonii FI9785: FI9785_1509
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Entry
FI9785_1509 CDS
T01120
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ljf
Lactobacillus johnsonii FI9785
Pathway
ljf03030
DNA replication
ljf03410
Base excision repair
ljf03420
Nucleotide excision repair
ljf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FI9785_1509 (ligA)
03410 Base excision repair
FI9785_1509 (ligA)
03420 Nucleotide excision repair
FI9785_1509 (ligA)
03430 Mismatch repair
FI9785_1509 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljf03032
]
FI9785_1509 (ligA)
03400 DNA repair and recombination proteins [BR:
ljf03400
]
FI9785_1509 (ligA)
Enzymes [BR:
ljf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FI9785_1509 (ligA)
DNA replication proteins [BR:
ljf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FI9785_1509 (ligA)
DNA repair and recombination proteins [BR:
ljf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FI9785_1509 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FI9785_1509 (ligA)
MMR (mismatch excision repair)
DNA ligase
FI9785_1509 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FI9785_1509 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CAX67365
UniProt:
D0R5K2
LinkDB
All DBs
Position
complement(1427550..1429556)
Genome browser
AA seq
668 aa
AA seq
DB search
MAVLTHSEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEQKFPDLVTA
DSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKDELKEFDERITKLVGHPVAYNVELKID
GLSLSLEYTKGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPLTTEVRGECYMEKEA
FATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPPRNITSQHQA
IDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDLSLQNELGN
TVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVSRASLHNPD
YLREKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYEIPNVCPSCGETLVHLQDEV
ALRCINPMCPAQIEEGIIHFASRGAMNIMGLGPRIVKQLIDKGFINDVADLYHLTPDQLG
QLDHFKEKSITNLLSSIENSKQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLTV
PELTSIDTIGETIAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTV
VLTGKLSAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQ
EAIAKIEK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcagttttaactcatagtgaggcttctcagaaagtcgatgaattaagaaaaaagctc
gataaatgggcagatgattattatgcaaaagatgctccggtagttgaagatgcagtatat
gataagacctatcaggaattagtagaattagagcagaaatttcctgacttagtaactgct
gattcaattacccaacgagttggtggagagattaaaagcgatctttctaaagttgaacac
cccgttccgatgctttcaatgggggatgttttctcaaaagatgagcttaaagaatttgat
gaaagaattacgaaattagttggtcacccagtagcttataatgtggaattaaaaattgat
ggattatctttatccttagaatatactaagggaaaattaacacgtgcttctacaagagga
aatggccgtgttggtgaagatgtaacagctaatgccaaatttattaaagatattcctcaa
acattacctgagcctttaacaactgaggttcgtggtgaatgctatatggagaaagaagca
tttgcaaccttaaatgcagaacgtgatgaaaaaggagagcaagtttttgctaatcctcga
aatgctgctgctggttctttaagacaattagatgctcgaattactaaaaaaagaaattta
agtacttttatttatacttgggttaatccaccaagaaacattacaagtcaacatcaagcg
attgatgaaatgaatcgattaggatttcatactaatcagtctggacgacgttttgaatca
atggacgaagtatttaagtttattgatgaatataccgctaaacgtaatgatttaagttat
ggaattgatggtattgttttaaaagttgacgacttaagtttacaaaatgaactgggtaat
actgtaaaagtacctcgctgggaaattgcctataagtttccaccagaagagcaagagact
gtagttagaaatattgaatggacagttggccgaactggagtagtaacacctactgcagta
atggatccagttaaacttgctggaactattgtttctcgtgcgtctttacataatccagac
tacctaagagaaaagggcgtaagaattggcgatacagttaaattgcataaagctggagat
attattccagaaatttctagtgttgttttaagcaaaagacctaaagatagtaagccatat
gagattccaaatgtttgtccttcatgtggagaaactttggttcacttgcaagatgaagta
gcacttcgttgtattaatccgatgtgtccagctcaaattgaagaaggaattattcatttt
gcttcacgtggagcgatgaatattatgggacttggtcctagaattgttaaacagctaatt
gataagggatttattaatgatgtagctgatttatatcatttaactccggaccaactagga
cagctcgatcactttaaggaaaaatcaattactaatttattatcttctattgaaaatagt
aagcaaaactctgctgaattattactgtacggcttaggaattgatcatgttggtgctaag
gcagctagattaattttggaaaaatataaaaatttggaaaaggttagtcaattaacagtg
ccagaattaacaagtatcgatacaataggagagacgattgcggagtcattaacagcatat
tttaatcaaccaagcgcacagaaactactacaagaattgcgtgacagtggattaaatatg
gaatatttaggaacagttgaagaagaagcaccagataatttctttaaggaaaagacagta
gttctaactggaaaattatctgcctttactcgaagtgaatttactaagaagcttcaggat
cttggtgcaaaagtaactgggtcagtttctaagaagacagattatttgatctacggagca
gatgcgggctctaaaaaagataaggctgaaaaacttcaagttccaatgttaactgaacag
gaagcaattgcaaaaattgaaaaataa
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