Lactobacillus johnsonii DPC 6026: LJP_1470c
Help
Entry
LJP_1470c CDS
T01960
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ljh
Lactobacillus johnsonii DPC 6026
Pathway
ljh03030
DNA replication
ljh03410
Base excision repair
ljh03420
Nucleotide excision repair
ljh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ljh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJP_1470c
03410 Base excision repair
LJP_1470c
03420 Nucleotide excision repair
LJP_1470c
03430 Mismatch repair
LJP_1470c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljh03032
]
LJP_1470c
03400 DNA repair and recombination proteins [BR:
ljh03400
]
LJP_1470c
Enzymes [BR:
ljh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LJP_1470c
DNA replication proteins [BR:
ljh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LJP_1470c
DNA repair and recombination proteins [BR:
ljh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LJP_1470c
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJP_1470c
MMR (mismatch excision repair)
DNA ligase
LJP_1470c
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LJP_1470c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AEB93790
LinkDB
All DBs
Position
complement(1583792..1585798)
Genome browser
AA seq
668 aa
AA seq
DB search
MAVLTHNEASQKVDELRKKLDKWADDYYAKDAPVVEDAVYDKTYQELVELEEQFPDLVTA
NSITQRVGGEIKSDLSKVEHPVPMLSMGDVFSKEELKEFDERITKLVGHPVAYNVELKID
GLSLSLEYTNGKLTRASTRGNGRVGEDVTANAKFIKDIPQTLPEPLTTEVRGECYMEKEA
FATLNAERDEKGEQVFANPRNAAAGSLRQLDARITKKRNLSTFIYTWVNPPRNITSQHQA
IDEMNRLGFHTNQSGRRFESMDEVFKFIDEYTAKRNDLSYGIDGIVLKVDDLSLQNELGN
TVKVPRWEIAYKFPPEEQETVVRNIEWTVGRTGVVTPTAVMDPVKLAGTIVSRASLHNPD
YLREKGVRIGDTVKLHKAGDIIPEISSVVLSKRPKDSKPYEIPNVCPSCGETLVHLQDEV
ALRCINPMCPAQIEEGIIHFASRGAMNIMGLGPRIVKQLIDKGFINDVADLYHLTPDQLG
QLDHFKEKSITNLLSSIENSKQNSAELLLYGLGIDHVGAKAARLILEKYKNLEKVSQLTV
PELTSIDTIGETIAESLTAYFNQPSAQKLLQELRDSGLNMEYLGTVEEEAPDNFFKEKTV
VLTGKLSAFTRSEFTKKLQDLGAKVTGSVSKKTDYLIYGADAGSKKDKAEKLQVPMLTEQ
EAIAKIEK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcagttttaactcataatgaggcttctcagaaagtcgatgaattaagaaaaaagctc
gataaatgggcagatgattattatgcaaaagatgctccggtagttgaagatgcagtatat
gataagacctatcaggaattagtagaattagaagagcaatttcctgacttagtaactgcc
aattcaattacccaacgagttggtggagagattaaaagcgatctttctaaagttgaacat
cccgttccgatgctttcaatgggggatgttttctcaaaagaggaacttaaagaatttgac
gaaagaattacgaaattagttggtcacccagtagcttataatgtggaattaaaaattgat
ggattatctttatccttagaatatactaacggaaaattaacacgtgcttctacaagagga
aatggccgtgttggtgaagatgtaacggctaatgccaaatttattaaagatattcctcaa
accttgcctgaacctttaacaactgaggttcgtggtgaatgctacatggagaaagaagca
tttgcaaccttaaatgcagaacgtgatgaaaaaggagagcaagtttttgctaatccccga
aatgctgctgctggttctttaagacaattagatgcgcgaattactaaaaaaagaaattta
agtacttttatttatacttgggttaatccaccaagaaacattacaagtcaacatcaagcg
attgatgaaatgaatcgattaggatttcatactaatcagtctgggcgacgttttgaatca
atggacgaagtatttaagtttattgatgaatataccgctaaacgtaatgatttaagttat
ggaattgatggtattgttttaaaagttgacgacttaagtttacaaaatgaactgggtaat
actgtaaaagtacctcgctgggaaattgcctataagtttccaccagaagagcaagagact
gtagttagaaatattgaatggacagttggccgaactggagtagtaacacctactgcagta
atggatccagttaaacttgctggaactattgtctctcgtgcgtctttacataatccagac
tacctaagagaaaagggcgtaagaattggcgatacagttaaattgcataaagctggagat
attattccagaaatttctagtgttgttttaagcaaaagacctaaagatagtaagccgtat
gagattccaaatgtttgtccttcatgtggagaaactttagttcacttgcaagatgaagta
gcacttcgttgtattaatccgatgtgtccagctcaaattgaagaaggaattattcatttt
gcttcacgtggagcgatgaatattatgggacttggtcctagaattgttaaacagttaatt
gataagggatttattaatgatgtagctgacttatatcatttaactccggaccaactagga
caactcgatcactttaaggaaaaatcaattactaatttattgtcttctattgaaaatagt
aagcaaaactctgctgaattattactgtacggcttaggaattgatcatgttggtgctaag
gcggctagattaattttggaaaaatataaaaatttggaaaaggttagtcaattaacagtg
ccagaattaacaagtatcgatacaataggagagacgattgcggagtcattaacagcatat
tttaatcaaccaagcgcacagaaactactacaagaattgcgtgacagtggattaaatatg
gaatatttaggaacagttgaagaagaagcaccagataatttctttaaggaaaagacagta
gttctaactggaaaattatctgcctttactcgaagtgaatttactaagaagcttcaggat
cttggtgcaaaagttactgggtcagtttctaagaagacagattatttgatctacggagca
gatgcgggctctaaaaaagataaggctgaaaaacttcaagttccaatgttaactgaacaa
gaagcaattgcaaaaattgaaaaataa
DBGET
integrated database retrieval system
