Acetilactobacillus jinshanensis: ELX58_01925
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Entry
ELX58_01925 CDS
T06588
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lji
Acetilactobacillus jinshanensis
Pathway
lji03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lji00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELX58_01925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lji03019
]
ELX58_01925
Messenger RNA biogenesis [BR:
lji03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ELX58_01925
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QBP17930
UniProt:
A0A4P6ZL06
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All DBs
Position
373625..375310
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AA seq
561 aa
AA seq
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MKSKVEILPLGGIREKGENLYAVVVNGGIYILDCGLRYPTNEMLGIDVIIPDVTYLKQNR
NRIVGVFLTHGHEEAIGALPYFLKEFNVPVFGSKFTIAMAEHLVHSHRATRKFNKFNVIN
PNSEIIFRDVVVTFFNTTHSIPGSMGIVLNTKEGQIVYTGNFKFDPTVYKNYRSNLIRIG
EVGKKGVLALLSDSANAENYHENVPELKIDQYLTYLFSHRKNRIIVGCQSSNLLRIQQIF
NAAFKAHRKVCLMHPRLEAPIIIGLKYHQLTLPAKGMLVNPKNINSIDKSKLVILETGKM
GESLKALRRMASQQNGSVNIKPNDLVIIATEPNHSMEVQVAETKDAICRAEGIFRMITDE
FNVTDNASRRDMQMIIDLLHPKYLIPVLGEYRVLKAYKRLAIQMGFPKDHIITPSKGSTL
VYNGHRMNYGKSVPAGDTIVDGSGVGDVGNIVLRDRKVLSEDGIFIAVVTIDHKTGKVVA
DPQIKSRGFIYVSLNRALMNKSAQLVKHIVQKDLSNGQYDWSYLKKDIRDVLSNYLYKAT
THHPVIMPVIMEINHVNKESD
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtaaagttgaaattctcccacttgggggtatacgagaaaaaggcgaaaattta
tacgcagtcgtcgttaatggcggcatttatattttagattgtggattaagataccctaca
aatgaaatgctcgggattgacgttattattcccgacgttacttacttgaaacagaatcga
aatcgaatcgtgggtgtctttttaactcacggtcatgaagaagcaattggtgctttacct
tatttcttaaaagaatttaacgtaccagtctttggatcgaaattcacaatcgctatggct
gaacatttagtccacagtcatcgcgccactcgtaaatttaacaaatttaatgtaattaat
cctaatagtgaaattatcttccgagacgttgtcgtcacatttttcaatactacgcattca
atccctggatcgatgggaatcgtcttgaatactaaagagggtcaaatcgtttataccggt
aattttaagtttgacccgacggtttacaagaattaccgatcaaacctgattagaattggt
gaagttggtaaaaagggcgtcttagcattattaagtgactcagcaaatgctgaaaattat
cacgaaaacgtgcctgaattaaagattgatcagtacctgacgtacttatttagccaccgt
aagaaccggatcatcgttggctgtcaatccagtaatttacttcggatccaacagatcttt
aacgcggcctttaaagctcatcgtaaagtttgcttgatgcaccctagattagaagcaccg
attataatcggtctgaagtatcatcagttgacgttaccagcaaaagggatgctggttaac
ccgaagaacattaattccattgataaatctaaattagttattttagaaaccggtaaaatg
ggagaatctctaaaagccctcagaagaatggccagtcaacagaacggttccgttaatatt
aagcccaatgatttagtcatcattgcgaccgaacctaatcattcgatggaagttcaggtt
gctgaaactaaggatgctatttgccgagctgaaggcatctttagaatgatcaccgatgaa
tttaacgttactgataacgctagtcgtcgtgatatgcagatgatcattgatttactgcac
ccgaagtacctaattccagtattaggtgaatatcgagttcttaaagcatataagcgatta
gctattcaaatgggctttccaaaggatcacatcattacaccgtctaaaggtagcacgcta
gtttataacggccaccgaatgaattatggtaagtcagtccctgctggtgataccattgtt
gatggcagtggcgttggtgacgttggtaatattgtgttacgtgatcgtaaagtcttatct
gaagacgggatctttattgccgtcgttacgattgatcataagacgggtaaagtcgttgct
gacccccagatcaaatcacgtggctttatctacgtcagtttgaacagggctttaatgaac
aagagtgctcaattagttaagcacattgttcaaaaggatttaagcaatggtcagtatgac
tggagttatcttaagaaagacattcgcgatgtcttgagtaattatctatacaaggcaacg
actcatcaccctgtaattatgccagtaattatggaaattaatcatgttaataaggaatct
gattaa
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