Liolophura japonica (common chiton): 135470407
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Entry
135470407 CDS
T09976
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135470407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ljp03400
]
135470407
Enzymes [BR:
ljp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135470407
DNA repair and recombination proteins [BR:
ljp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135470407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Viral_alk_exo
BRCT_3
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
135470407
NCBI-ProteinID:
XP_064605399
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All DBs
Position
7:14016582..14034878
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AA seq
928 aa
AA seq
DB search
MATNDVQNDGADEPNKLFQTVASKVAFAEICGLLELITRTQGNDKKKRILKDFVDKWREF
HKTLHKNNTDVEDSFYPAMRLLLPHLEKERVAYGIKENMLAKLLIEVLCLGKDSPDAQKL
LHYKAPKNAKGDAGDFASVAYFVLKNRCPEKGSLTIQEVNECLDGIARNNAAKNKEMVRK
NILHLLKNLSAVEQKWLIRMIVKEMKIGLSQASVLSVYHPDAEDFYNVNNNMEKVCRLLR
DLKTRVHEIGVTVFSPFSPMLGERGAPDKVEKLMEGKPYFIETKYDGERMLLHKDEGEYK
YFSRSGNDYTSVFGSNSFDGTFTPYIVNCFKPEVKTCILDGEMLGYDAATKTFGTKGERF
DIKSAAESGTYQPCLHVFDILLFNGKVLTNLPLRERVKYLERVFNPAEGRLLISQVKEGR
TNQDCVDALNEAIDSREEGIMVKNPDTVYRPNTRKGGWFKIKPEYISGLMDELDVLIVGG
YFGVGHRGGMMSHFLCGVAVPPEDGGEPQVFYSFCKVGSGYSKKELSEYNRRMVDHWQVY
DKKNPPSALVLAAGFKEKPDAWIEPSKSFILQIKAAEIIESDRFKTGCTLRFPRVEKIRD
DKLWSECMTTLDIDDLKQKSGGKLSGKRLELGDQEEVPVKKRRKVVSRVVKPTIGSQFRK
ADVSGVQKISEIFAGKEFCIINGPSRFPKPELEKKVVEFGGSVVQNPGSDTFCVLAEKVA
IRVKNLISRNIYDIVRVDWFLRCVESSKWIPWSPSDMLHTSPKTEARLKLDYDEFGDSYT
EGTTCGQLQAVFDKMKPQQDFCPLTTEDIAEVEDRYFPDDSPYGLFRTCRVYLDSHLVVG
DPSTHLKDCHLDLLALELRFFGATLTETLEENVSHVLVDESDLSRLDDLKKRRRARTRKF
YIVTEEWVRQCIEEGELCKERDYEPVLP
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaacgatgtacaaaatgatggggcagacgaacccaacaagcttttccaaaca
gtggcctcaaaagttgcttttgccgaaatttgtggactgttggaactgatcacaagaact
caaggaaatgacaaaaagaaacgcattctgaaggactttgtggacaagtggcgagaattc
cacaagactcttcacaaaaacaacacagacgtggaggactctttttacccagcaatgaga
ctgctacttccacatttggagaaggaacgagttgcatatggaataaaggagaacatgctg
gccaaactgctgattgaggtgttgtgcttggggaaggatagcccagatgcgcagaaactt
ctccactataaagcgcccaaaaatgctaaaggggatgctggagattttgccagcgtggct
tattttgtgcttaaaaatcgctgtccagagaaaggtagcttgacgattcaagaggtgaat
gaatgcctggatggtatagccaggaacaatgcagccaagaacaaggaaatggtgcggaaa
aacatcctccatcttctcaagaatctgtcggctgtcgagcagaaatggttgatccgtatg
attgtgaaagagatgaagattggcttgagccaggcgtccgtgttatctgtctaccatccg
gatgcagaggatttctacaatgtcaacaacaacatggagaaggtgtgtcgtttgctacga
gatctgaagacccgtgttcacgagataggtgtcacagttttctcccctttctcgcccatg
ttaggagaacggggcgcacctgacaaggttgagaagctgatggaaggaaaaccctatttc
atcgagaccaagtatgacggtgagagaatgttattacataaggacgaaggagaatacaag
tatttctcaagaagtggtaatgattacaccagtgtctttggtagcaattcatttgatgga
actttcacaccatatattgtgaactgcttcaagccagaagtgaaaacttgcatacttgat
ggggagatgttggggtatgacgccgcaactaaaacatttggtacaaaaggtgagaggttt
gacatcaaatcagcagctgagtctggcacctatcagccatgtctgcatgtatttgacatc
ctcctgtttaatggcaaggtcctgactaatctgcccctgagggagagggtcaagtacctg
gagcgggtgttcaaccctgcggaggggagactactcatcagccaggtgaaggagggacgc
accaaccaggactgtgtagatgcactgaatgaggctatagacagtcgtgaggagggcatc
atggtgaagaaccctgacaccgtgtaccggcccaacaccaggaagggcggctggttcaag
atcaagcccgaatacatcagcggactgatggatgaactggacgtgctgatcgtgggaggg
tactttggggtggggcatcggggtgggatgatgtcacactttctgtgtggagtggctgtg
cctccagaggatgggggagagcctcaggtcttctactccttctgcaaggttggctctggc
tatagtaagaaggagctgagcgaatacaacaggcggatggtggaccactggcaggtgtat
gacaaaaagaacccaccatctgcccttgtgcttgccgcgggctttaaggagaagcctgac
gcctggatagagccctcaaagtcttttatattacagatcaaggcagccgaaattattgag
agtgaccgttttaaaacaggttgcaccctgcggttccccagggtggagaagattcgtgat
gataagctatggtcagagtgcatgacaacactggatatcgatgacctcaaacagaagtct
ggtgggaagttgtctgggaaaagactggagcttggtgaccaggaggaggtgcctgtcaag
aagaggaggaaggtcgtgtcccgggtcgtcaagccgaccattgggtcgcagttcagaaag
gccgatgtctcaggtgtgcagaagatttcagagatttttgctggtaaagagttctgtatc
atcaatgggccatcaagatttccaaagccagagctagagaagaaagtggtggagtttgga
ggatcagtggttcaaaacccaggttctgatacgttttgtgtgcttgcggaaaaagtggcc
atccgtgtgaaaaatcttatcagccggaatatttatgacattgtcagggtagattggttc
ctgcgatgtgtggagagttccaagtggattccatggtctccatctgacatgctacacaca
tccccaaagacagaagccaggctgaagctggactatgatgagtttggggacagctacaca
gagggaaccacctgcggacagctgcaagcagtgtttgacaagatgaaaccgcaacaggat
ttctgtcctttgactactgaggacatcgctgaagtagaggacagatatttccctgatgac
tccccatatggtctgttcagaacatgcagggtttacctggattctcacctggttgttgga
gaccccagcacgcaccttaaagactgtcacctagacttgctggctcttgaactcaggttt
tttggagcgacattgacagaaactctggaagaaaatgtgtctcatgtccttgttgatgaa
agtgatttatctcgtctggatgacctgaagaaacgcagacgagcgaggactcgcaagttt
tatattgtgacggaggagtgggtgcgacagtgtatcgaggaaggggagttgtgcaaagag
agagactacgaaccagttctaccttga
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