Legionella jordanis: NCTC11533_01862
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Entry
NCTC11533_01862 CDS
T06275
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ljr
Legionella jordanis
Pathway
ljr03030
DNA replication
ljr03410
Base excision repair
ljr03420
Nucleotide excision repair
ljr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ljr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11533_01862 (ligA)
03410 Base excision repair
NCTC11533_01862 (ligA)
03420 Nucleotide excision repair
NCTC11533_01862 (ligA)
03430 Mismatch repair
NCTC11533_01862 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljr03032
]
NCTC11533_01862 (ligA)
03400 DNA repair and recombination proteins [BR:
ljr03400
]
NCTC11533_01862 (ligA)
Enzymes [BR:
ljr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11533_01862 (ligA)
DNA replication proteins [BR:
ljr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11533_01862 (ligA)
DNA repair and recombination proteins [BR:
ljr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11533_01862 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11533_01862 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC11533_01862 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11533_01862 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
SecM
DUF7340
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
VEH12999
LinkDB
All DBs
Position
1:complement(2037934..2039949)
Genome browser
AA seq
671 aa
AA seq
DB search
MNQVIQNKIKTLQERIRLYDYHYYVLDEPLVPDIEYDRCFKELQALENENPEFISADSPT
QRVGVTPAGAFEEVNHIKPMLSLANVFSEKELQAFMKRVADKLDMSEESLEFTCEPKLDG
LAVSLTFKDGLFAYAATRGDGAVGENISNNIKTIAAVPLKLLCETPPSLVEIRGEVYIPK
AGFEAYNARARVTGEKLFANPRNAAAGSLRQLNPAITASRPLAIYFYGLGACEGFDLPDS
HYQQLQLLRTWGFRVSNETKKTRGLSGCLEFYQNILKRRMDLAYEIDGVVYKLDDINQQQ
ELGYVARAPRFACAHKFPASEEMTELLAVDFQVGRTGALTPVARLKPVSVAGVTVSNATL
HNMDEILRKDIRIGDTVVIRRAGDVIPEVVSVVLEKRPLHTEIIHLPAHCPVCGADVIRE
EDEAVARCTGGLFCTAQLKRMLLHFASRNAMAIDGLGAGLVDLFVGEGLVRDVSDLYQLD
LETIMNLPRMGRKSAENLLTAIEKSKKTTFSRFLYALGIREVGEVSARVLASEFQDIPSL
KAASVDELMTLKDIGPVCAYHVVHFFAQAHNCDVIDRLISYGVHWPKEEKKTFNQEHPLY
GKTLVLTGTLNSMGREEAKARLLALGAKVSGSVSKKTDFVIAGAEAGSKLDKANELGVRV
LNEEEFIALLT
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagtcattcaaaataaaattaaaacgcttcaagaacgcatccgcttgtacgac
taccattattatgtactggatgaaccccttgttcctgacattgaatacgaccgctgtttt
aaggagttacaagctcttgagaatgagaatccagaattcattagcgctgattcaccaaca
cagcgtgtgggcgtgacacccgctggggcattcgaagaagttaatcatattaagcccatg
ctctctttagccaacgtcttttcagaaaaagagctgcaagcatttatgaagcgggttgct
gataaattggacatgagtgaagagtccctggagtttacttgcgaacctaaattggatggt
ttagcggtaagtttgacttttaaagacggcttgttcgcttatgctgcaacgcgcggagat
ggtgccgtgggagaaaacatcagtaataacattaaaaccattgcagcggtcccccttaaa
ttgctatgcgaaacccctccatccctagttgaaatccgtggggaagtctacatacctaag
gcgggtttcgaagcttacaacgccagggcaagggtgactggtgaaaagttgtttgccaat
ccacgcaatgcggcagcgggcagtttacgccagttaaatcctgccataacggcttcaagg
cctttggccatttatttttatggtcttggggcttgcgagggatttgatcttcctgatagt
cattaccaacaattgcaactgctgcgcacttgggggtttcgagtttcgaatgaaactaaa
aaaaccaggggtcttagcggctgtcttgagttttaccaaaatattttaaaacgccgcatg
gatttggcttatgaaattgatggcgtggtttacaaattggatgacattaaccagcagcag
gaattaggctacgttgcccgcgccccacgttttgcctgtgcccataaatttcctgcgagt
gaggaaatgactgagttgttggcggttgatttccaggttgggcgtacaggagcattgact
ccagtggctcgtcttaagcctgtcagtgtggctggtgtaacggtcagtaatgccactttg
cataatatggatgaaatattacgcaaagacattcgtattggtgatacggttgtgattcga
agggcgggcgatgttataccggaagtagtttcggtggtactcgaaaagcgccctcttcat
acggaaattattcatcttcctgctcactgtccagtttgtggtgctgatgtgattcgcgaa
gaagatgaagccgttgcacggtgtacgggtggattgttctgtacggctcagcttaaacga
atgctgctccattttgcttcgcgaaacgcgatggcgattgacggtttgggagcaggactg
gtggatttatttgtcggggagggactggttcgggatgtatcggatttataccaactggat
ctcgaaacgattatgaatttgccgcgaatgggacgcaaatcggcagaaaatttgctaaca
gccattgaaaaaagtaaaaaaactacattctctcgctttttatatgccttgggtattcgg
gaagtaggggaggtcagtgcacgggttttggcttctgagttccaggacatcccatcttta
aaggctgcttcagttgatgagctaatgaccttgaaagacattggccctgtctgtgcctat
catgtggtgcatttctttgctcaagctcataattgcgatgtcattgataggctgatctct
tacggtgttcactggccaaaagaagagaaaaaaacattcaaccaagaacatcctctttat
ggaaaaaccctggttttaacaggaacattaaacagtatgggacgtgaagaagccaaggcg
cgccttcttgctttaggcgcaaaagtttcaggcagtgtttccaaaaaaacagacttcgtc
attgccggtgctgaagcgggttcaaagcttgataaagcaaatgaacttggcgttagggta
ttgaatgaagaggaatttattgcgcttttgacttga
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