Leptospira kmetyi: EFP84_11955
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Entry
EFP84_11955 CDS
T05705
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lkm
Leptospira kmetyi
Pathway
lkm03030
DNA replication
lkm03410
Base excision repair
lkm03420
Nucleotide excision repair
lkm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EFP84_11955 (ligA)
03410 Base excision repair
EFP84_11955 (ligA)
03420 Nucleotide excision repair
EFP84_11955 (ligA)
03430 Mismatch repair
EFP84_11955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lkm03032
]
EFP84_11955 (ligA)
03400 DNA repair and recombination proteins [BR:
lkm03400
]
EFP84_11955 (ligA)
Enzymes [BR:
lkm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EFP84_11955 (ligA)
DNA replication proteins [BR:
lkm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EFP84_11955 (ligA)
DNA repair and recombination proteins [BR:
lkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EFP84_11955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EFP84_11955 (ligA)
MMR (mismatch excision repair)
DNA ligase
EFP84_11955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EFP84_11955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_2
HHH
MTR4_beta-barrel
DUF4796_N
Bac_small_YrzI
TssR_C
Motif
Other DBs
NCBI-ProteinID:
AYV56153
UniProt:
A0A2M9XRN5
LinkDB
All DBs
Position
1:2533845..2535890
Genome browser
AA seq
681 aa
AA seq
DB search
MPKKKDDPKKTLSEKEAKETISKLSDEIRHHQYLYYVKNQAKISDYDFDQLFRKLQDLEE
EFPQFKDPASPTLVVGSDLDKDFEKFQHKLPVLSLINTYNDDELLDWVNKTDPDGLYSVE
WKIDGASIVLYYENGILQNGVTRGSGGIGDDVTDNIRTIRNIPLRLPEPITVYLRGEVFM
TFKDFEEFNELSSGKYANPRNLSAGSIKQKNSTDTAKRPLRIFTYDATFPDVAKKFKTHQ
EILNKLEKLTFPVPPDTVFATGAKIAKTIQDFKKKKDKLGFPTDGLVIKLNDVSKRDALG
YTSHSPRWARAYKFDAVMKESKIVDITYAVGRTGKITPRAEIEPVSLAGTTVTFATLHNQ
DYINELGVGIGAIVRVAKRGEIIPAVEEVVTPGKDVFQIPDRCPSCKTKTIKKENLVDLF
CPNPDCPDRVKNGIIFYCQRKQMDIEGLGDKQIEFLYDHGYIKSVADLYDLKDKKDKLME
EEGFGEKSVAIILAGIEQSKQKDFRFVLPSLGLSELGHKVTELLIEHGIDSMDEILSISK
DKKRIDSLLEIPGIGPSTVQAFQENFSDKRILKLIDRLKKAGLKMKADAVKVADQQPFAG
QSWCVTGSFENFQPRDKAMDLIVYYGGRKVSAVSSKTTHLLAGPGAGSKLEKANELGISV
YDEKQFLDLLKSFKIDFKNPI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaagaaagacgatcctaaaaaaactctttcggagaaagaggctaaggaaaca
atctccaaactctccgacgaaatccgtcatcaccagtatttatattacgttaaaaatcag
gccaaaatttccgattacgacttcgatcagttgtttcgcaaactccaggatttagaggaa
gaatttccgcagttcaaggatcccgcaagtcccacgttagtcgtcggttcggacttggat
aaggacttcgaaaaattccaacacaaacttcccgtcttgtcgctgatcaacacatacaac
gacgacgaacttttggattgggtcaataaaaccgatccggacggactttattccgtggaa
tggaaaatcgacggagcctccatcgtattgtattatgaaaatggaattctccaaaacgga
gtcacgcgcggctccggaggaatcggagacgacgtaaccgataatatacgcacgattcgt
aatattcctttgcgattgccggaaccgattacggtttatcttcgaggcgaggtttttatg
acctttaaggatttcgaagaattcaacgaactttcttcgggaaaatacgcgaatccacga
aacctttccgcgggatcgatcaaacaaaaaaattccacggataccgcaaaacgtcctctg
agaatttttacatacgatgcgacgtttcccgatgtcgctaaaaagttcaaaacacatcag
gaaattctaaacaaactcgaaaaacttacctttcccgttccgcctgacacggtttttgcg
accggagctaagatcgcaaagacgatccaggattttaaaaagaaaaaagacaaactcgga
tttccaacggacggacttgtgatcaaactcaacgacgtttccaaacgggacgcgctcggt
tatacatctcattctccgcgatgggcgagggcgtataagttcgacgcggtgatgaaggaa
agtaagatcgtggacatcacatacgcggtcggtcgtacgggaaagatcacaccgagggcg
gagatcgaaccggtcagtcttgcgggaaccaccgtaacgtttgcgactcttcacaatcag
gattatataaacgaactcggagtcgggatcggagcgatcgttcgcgtcgcgaaacgcgga
gaaatcattccagccgtcgaagaggtagttactcccggaaaagatgtgtttcaaattccg
gatcgttgcccatcgtgtaagacgaagacgatcaaaaaagaaaatctcgtcgatctattc
tgtccgaacccggattgtcccgatcgtgtgaagaacggaatcatcttttattgtcaaaga
aagcagatggacatcgaaggactcggagataaacaaatcgaattcttatacgatcacggt
tatataaaatccgtagccgatctttacgacctcaaagataaaaaagataagttgatggaa
gaggaaggattcggagaaaaaagcgtagcgatcattctcgctggaatcgaacaatccaaa
caaaaggatttccgttttgtccttccttcgctcggactttccgaactcggtcacaaagtt
acggaattgttgatcgaacacggaatcgattcgatggacgagattctttccatctccaaa
gacaaaaaacgaatcgattctctattggaaattccgggcatcggaccttccacggttcag
gcgtttcaggagaatttttccgataaaagaattttaaaactcatcgatcgtctcaaaaaa
gccggactcaagatgaaagccgacgcggtaaaggtcgcggatcaacaacctttcgcggga
caatcctggtgcgttaccggttcgtttgaaaactttcagcccagggacaaggctatggat
ctgatcgtttattacggcggcagaaaagtgagcgccgtaagttctaagacgactcatttg
ttggccggaccgggcgccggatctaaattagaaaaagcgaatgaacttggaatctccgtt
tacgacgaaaaacaattcttagatttgctaaagtctttcaaaatcgactttaagaatccg
atttag
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