Levilactobacillus koreensis: ABN16_10390
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Entry
ABN16_10390 CDS
T03995
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lko
Levilactobacillus koreensis
Pathway
lko03030
DNA replication
lko03410
Base excision repair
lko03420
Nucleotide excision repair
lko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABN16_10390 (ligA)
03410 Base excision repair
ABN16_10390 (ligA)
03420 Nucleotide excision repair
ABN16_10390 (ligA)
03430 Mismatch repair
ABN16_10390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lko03032
]
ABN16_10390 (ligA)
03400 DNA repair and recombination proteins [BR:
lko03400
]
ABN16_10390 (ligA)
Enzymes [BR:
lko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABN16_10390 (ligA)
DNA replication proteins [BR:
lko03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABN16_10390 (ligA)
DNA repair and recombination proteins [BR:
lko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABN16_10390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABN16_10390 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABN16_10390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABN16_10390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AKP65370
UniProt:
A0AAC8ZGV8
LinkDB
All DBs
Position
2306802..2308832
Genome browser
AA seq
676 aa
AA seq
DB search
MTDQPIDALTEEQAATEAADLRPQLLKWGQQYYDADTPAVEDDVYDRVYARLVALETAFP
AIVTPDSPTQRVGGSARGDLPKVTHDIPMLSLGDVFSVDELKAFDERLRSNVEDDFDYNC
ELKIDGLAISLRYENGEFVQGSTRGNGQIGEDITANLKTVKSIPQTLSRPLTIDVRGECY
MPKAAFLALNERREAAGKAPFANPRNAAAGSLRQLDTQVTADRQLATFMYNIADYEPLNT
RTQSGLLDELAELGFTTNATYQVAHNMDDVAAYIDQYQGKRADLPYGIDGIVIKANSLPL
QREIGATVKVPRWAIAYKFPPEEVETVVRDIEWTVGRTGIVTPTAVMDPVALAGSTVARA
SLHNPDYLEAKDIRLGDTVLLHKAGDIIPEISQYVAAKRPADTQPYPVPTHCPSCGAELV
HLDEEVALRCINPRCPAQLAEGMNHFASRNAMNIAGLGPQIVSQLFDRKLVDDVASLYRL
TTDQLLTLDKFGEKSAQNLLTAIDNSRNNSLERLLFGLGIRHVGAKAARSIAAEFGDIDH
LMAADSERISAIDTVGGIIADSVVTYFASDQVQQLIAELREVGVNLTFTGEIPAADSEGQ
FAGQRVVLTGKLQELTRPEATEWLERHGATVTGSVSKKTDLLIAGEAAGSKLTKAQSLNV
PVWNEAQLRAAMDETK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaacccattgatgctttaactgaagaacaggccgctactgaagcggccgac
ttacggccccaacttctgaagtggggtcaacaatactacgatgcggatacaccagccgtt
gaagatgacgtgtacgaccgggtctacgcgcgattagtcgccttggaaacggcctttccc
gccatcgtcacgccggattcaccaacacaacgcgtgggggggagtgcccgtggtgactta
ccaaaggtcacgcacgatatccccatgttgtcattaggtgacgttttttctgtggacgag
ctcaaggcctttgatgaacgcttacggtcgaatgtcgaagacgacttcgactataactgt
gagttgaagatcgacggcctggcgatttcgctgcggtatgaaaatggtgaatttgtgcag
gggtctacgcgaggtaatggccaaattggtgaagacattactgctaatttaaagacggtc
aaatcaattccgcaaacgttgagtcggccgctaaccatcgacgtgcggggcgagtgctac
atgcctaaggccgccttcctagcgctgaacgagcgccgggaagctgctggtaaggcgcca
tttgccaatccgcggaatgctgcggccggaagcttgcggcaactcgatacgcaagtcacc
gctgaccgtcagttggcgacgtttatgtataacattgctgactacgaaccgctgaacacg
cggacgcagagcggtttgttggatgaattggccgaactaggctttacgacaaatgcaacc
tatcaagtggcccacaacatggatgacgtggctgcctatatcgaccagtatcaggggaaa
cgtgccgacttgccctatggcatcgacggcatcgtcattaaagccaattcgttaccgtta
caacgggagattggcgccacagtcaaggtgccacggtgggccattgcctacaagttccca
cccgaagaggtcgaaacggtcgttcgggatattgaatggaccgttggccgaacagggatt
gtgacgccaacggccgtaatggatcccgttgccttagctgggagcacagtggctcgcgcg
tccctgcacaatccagattacctggaggctaaggacattcggttgggcgacaccgtgttg
ctgcataaggcgggagacatcatccccgagatttcgcagtacgttgcggctaaacgccca
gcggatacacaaccgtatccggtgccaacgcactgtccttcctgtggggccgaactggtt
catttggatgaggaagtcgcgttacgctgcatcaacccacggtgtcccgcacagttggcc
gaaggaatgaaccactttgcctcgcggaatgccatgaacatcgctgggttaggaccacag
attgtgagtcagctgtttgaccgtaagttagtcgatgatgtggctagtttgtaccggctc
acaacggaccaattattaactttagataaatttggggagaagtcagcccaaaacctcttg
acagccattgataatagtcgcaataattcattagaacgtttgttatttggtttaggaatt
cgccacgtgggggctaaggccgctcggtcgatcgccgctgaatttggcgatatcgatcac
ttgatggccgccgacagcgagcgcatctccgccattgatacggtggggggcatcattgcc
gacagtgtcgtgacctactttgccagcgaccaggtgcaacagttgatcgcggaactccgt
gaagtgggtgtcaacttgacgtttactggtgagattccagccgccgacagtgagggccag
tttgctgggcaacgggtggtcctaacgggaaagctgcaagagctgactcgtccagaggcc
actgaatggctagaaagacatggtgccacggtcacggggagcgtctcaaagaagacggac
ctgttgattgcgggtgaagctgccggtagcaaactgaccaaggcacagtcgctgaacgtc
cccgtttggaacgaggcgcagctacgagccgccatggacgaaacgaaatga
DBGET
integrated database retrieval system
