Lepidochelys kempii (Atlantic ridley): 140912842
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Entry
140912842 CDS
T11378
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp04010
MAPK signaling pathway
lkp04120
Ubiquitin mediated proteolysis
lkp04140
Autophagy - animal
lkp04144
Endocytosis
lkp04517
IgSF CAM signaling
lkp04620
Toll-like receptor signaling pathway
lkp04621
NOD-like receptor signaling pathway
lkp04622
RIG-I-like receptor signaling pathway
lkp05132
Salmonella infection
lkp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140912842 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
140912842 (TRAF6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
140912842 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
140912842 (TRAF6)
04140 Autophagy - animal
140912842 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
140912842 (TRAF6)
04621 NOD-like receptor signaling pathway
140912842 (TRAF6)
04622 RIG-I-like receptor signaling pathway
140912842 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
140912842 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
140912842 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lkp04131
]
140912842 (TRAF6)
04121 Ubiquitin system [BR:
lkp04121
]
140912842 (TRAF6)
Enzymes [BR:
lkp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140912842 (TRAF6)
Membrane trafficking [BR:
lkp04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
140912842 (TRAF6)
Ubiquitin system [BR:
lkp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
140912842 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
zf-RING_5
DUF4455
RING_XB3-XBAT31
SlyX
TRAF3_RING
Med21
CCDC18_1st
CCDC39
PspA_IM30
DUF16
zf-RING_11
CENP-F_leu_zip
DUF8221
HMMR_N
PUMA_CC
U-box
zf-C2H2
Sina_ZnF
ATG16
STX17_N
DUF7310
Ataxin_7
DUF1664
zf-C2H2_4
Spc29
DUF7607
TMF_DNA_bd
DUF948
Motif
Other DBs
NCBI-GeneID:
140912842
NCBI-ProteinID:
XP_073204105
LinkDB
All DBs
Position
6:complement(53668491..53705079)
Genome browser
AA seq
546 aa
AA seq
DB search
MSLIQSDNSYRARDLETGCCAAMASACSAGAKEDSIGVSVSSGTGNLPNSFTEETQGYDV
EFDPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLF
PDNFAKREILSLKVRCPNKGCLLKMELRHLEEHQLNCDFCSVECPQCQGSFQKNQLQNHM
TLECPRRQVCCPNCATSMAYEDKELHDQNCPLANVFCEYCNTVLIREQMPNHYDNDCPTA
PVPCTYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQTLRSISVTTTPISYLSGLSFEPS
LFSHVPPATYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQSAHVGDLKRTIQN
LEEKITEMEAQQCNGIYIWKIENFSTYLRAQEEERPVVIHSSGFYTGKPGYKLCLRLHIQ
LPNSQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGHVRQNHEEVMEAKPEL
LAFQRPAIQRNPKGFGYVTFMHLQALKQRTYVKDDTLLVRCEVVTRLDLNSVRREGFQPR
STDGAV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgatacagagtgacaacagctatagagccagagatctggagactggctgctgt
gcagccatggccagtgcgtgcagtgctggagctaaagaagacagcataggtgtgtctgtc
agcagtgggactggaaaccttcccaactccttcacggaggagactcaaggatatgacgtg
gagtttgatcccccgctggaaagtaaatatgaatgtccaatctgtttgatggctctacgg
gaagcagtgcagacgccatgcggacaccggttttgcaaaggctgcattgtcaaatcaata
agagatgcaggtcacaaatgtccagtagacaatgaaattctactcgaaaaccaactcttc
cctgacaactttgccaaacgggaaatcctctcactgaaggtgagatgtcccaacaagggc
tgtcttctaaagatggagctgagacatctagaggagcatcagttgaattgtgacttctgc
tctgtggaatgcccacaatgccagggctccttccagaagaaccagctgcaaaaccacatg
acactggaatgcccacggcggcaggtctgctgtccaaactgtgccacatctatggcttat
gaagataaagagcttcatgaccagaactgtccacttgcaaatgtgttttgtgaatattgc
aatacagtgctcatcagagaacagatgcctaatcattatgataatgactgccctaccgcc
ccagtaccatgtacatacagtgcctttggatgtcctgaaaagatgcagaggaatgagttg
gcacgtcatatgcaagagttcactcaggttcacatgagaatgatggctcagactctccgg
agtattagtgttactacaactcccatatcctacctcagtggcctatcctttgagccgtct
ctcttctcacatgtcccacctgccacatatgactgcaacccagaagttgagaacttcaag
gaaaccattcagcagttggaaggtcgactggtaagacaagatcaccaaatcagagagctt
attgctaaaatggagactcagagtgctcacgtgggagacctcaaacgcactatccaaaat
ctagaggaaaaaattactgaaatggaggcacaacaatgtaacggcatttacatctggaag
attgagaacttcagcacatatctgagagcccaagaagaagagagacctgttgtgatccac
agctctggtttctacactgggaaaccaggctacaaactgtgtttgcgcctacatatccag
ttaccaaattcgcagcgctgtgccaactttatatccctctttgtccatactatgcaagga
gaatatgacagtcatctgccttggccatttcagggcaccatacgactttctattttggat
caatcagagggacatgtaaggcagaatcacgaagaagtcatggaagccaaacctgagctt
ctagccttccagagaccggcaatccagcgcaacccaaaaggttttggttatgtgacattc
atgcacctgcaagctttgaagcaaagaacctatgtaaaagatgataccctcctggtgcgc
tgtgaggttgtaacacgtttagacttgaacagtgtacggagagagggctttcaacctcgc
agtactgatggggctgtatag
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