Lactococcus lactis subsp. lactis KLDS 4.0325: P620_02625
Help
Entry
P620_02625 CDS
T02882
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lld
Lactococcus lactis subsp. lactis KLDS 4.0325
Pathway
lld03030
DNA replication
lld03410
Base excision repair
lld03420
Nucleotide excision repair
lld03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P620_02625 (ligA)
03410 Base excision repair
P620_02625 (ligA)
03420 Nucleotide excision repair
P620_02625 (ligA)
03430 Mismatch repair
P620_02625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lld03032
]
P620_02625 (ligA)
03400 DNA repair and recombination proteins [BR:
lld03400
]
P620_02625 (ligA)
Enzymes [BR:
lld01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P620_02625 (ligA)
DNA replication proteins [BR:
lld03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P620_02625 (ligA)
DNA repair and recombination proteins [BR:
lld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P620_02625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P620_02625 (ligA)
MMR (mismatch excision repair)
DNA ligase
P620_02625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P620_02625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGY43726
LinkDB
All DBs
Position
480172..482136
Genome browser
AA seq
654 aa
AA seq
DB search
MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHR
TGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLY
YENGLLMTAATRGDGTTGENITENVKRIKDVPLKLKEAIDIVVRGEAYLPRKNFAKLNKE
RELEGATPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG
FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWA
IAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIEEKDIR
IGDHVLIYKAGDIIPKVGKVLLDKRPEGLEGLEIPTKCPECCSELIHFEDEVALRCVNPL
CPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET
LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLLERFANLRALSKATEEEISEIPS
LGGVIATAVVSYFETDGAKILLDELENAGVNFDYLGAVNIEGILSGKTVVLTGKLTTLKR
SEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaaaaataaaagagcttacggaaaaattaaatcagtatgcttatgaa
tattatactttagatgagccttcggtagaagacagtgagtacgatcgactctatcaagaa
ttggtaaaattggaggctgaaaatccacaactaactagagcggattctccaacgcaccga
acaggtggggttattttagacggatttgttaaatttagacacccttataatctctatagt
ttaggggatgttttttcgcgtgaagaattagcagtttgggaagaacgagtccgcaaggaa
attgctaatccagagtatatttgtgaattaaaaattgatggtctttcattgtctctttat
tatgagaatggtttgcttatgactgcagcgactcggggcgatggaacaacgggtgaaaat
atcacagaaaatgtgaaacggatcaaagatgttcctttaaagcttaaagaagcaattgat
attgtggtacgtggtgaagcttatcttccacgtaagaattttgctaaactgaacaaagag
cgtgaacttgaaggagcaactccttttgctaatccaagaaatgcggccgctggaacttta
cgtcaacttgatacaaaaatagttgccaaacgtggtcttgcaactttcctttatcaagaa
gcaagtccagcaaccaatgacactcaagaagaagtcttagaatattttgaagaacttggt
ttccaagtcaatcctgaacgtaaatttgctcgaaatatggatgaaatttgggaatttatt
gaagaggctacccgtctgcgtgacgaactcccctatgacattgacggggttgttgtaaaa
gttaataatcttgctgagcaggaggaattaggttttacggttaaggcaccgcgctgggcg
attgcttacaaatttccagctgaacaagcagaaacagaaattttgtctgttgactggact
gtcggtcggacaggagttgtcaccccaacagcaaatatgaccccggttcttttagcacag
acaacggttgctcgagcaactttgcacaatgtggactatattgaagaaaaagatatccgt
attggcgatcatgtcttgatttataaggcaggggatattattccgaaggttgggaaagta
cttttggacaaacgcccagaaggtcttgaaggcttagaaattccaacgaaatgtccagag
tgttgttcggagttaattcattttgaagatgaagtggctttacgctgtgttaacccctta
tgtccggcgcaaattcgggaaaaactaattcattttgctagtcgtgatgctatgaatatt
gtgggcttaggcccgtcagtcatttcacaactttttgataaaaaattggtggctgatgtt
gctgatttatatcaattgacgattgaagatttactgacattagataaggtcaaagaaaca
ttggctcaaaaaattgtgtcagcaattgcgcagagtcgtgaaaattcggcggaaaaatta
ttatttggtttaggaattcgtcatgttggtggtaaagcggctaaattacttttggaacgt
tttgctaatcttcgagcgctttctaaagcaacagaagaagaaatttctgaaattccatct
ttaggtggggtcattgctacggctgtcgtttcttattttgaaactgacggagcaaaaatt
ttactggatgaacttgaaaatgctggtgtaaattttgattatttaggggctgttaatatt
gaaggaatattatcaggtaagacagttgtcttaactggtaaattgacgactttgaagcgc
tcagaagcaaaagaaaaattggaagcgttgggagcaaatgtttctggttctgtttctaag
aaaactgatttggtagtcgccggagaagaagcaggtagcaaactgacaaaagctcaagac
ttaggaattgaaatctggtcagagcaagatttgcttgatttataa
DBGET
integrated database retrieval system
