Legionella lansingensis: 44548918_01684
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Entry
44548918_01684 CDS
T05543
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llg
Legionella lansingensis
Pathway
llg03030
DNA replication
llg03410
Base excision repair
llg03420
Nucleotide excision repair
llg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
44548918_01684 (ligA)
03410 Base excision repair
44548918_01684 (ligA)
03420 Nucleotide excision repair
44548918_01684 (ligA)
03430 Mismatch repair
44548918_01684 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llg03032
]
44548918_01684 (ligA)
03400 DNA repair and recombination proteins [BR:
llg03400
]
44548918_01684 (ligA)
Enzymes [BR:
llg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
44548918_01684 (ligA)
DNA replication proteins [BR:
llg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
44548918_01684 (ligA)
DNA repair and recombination proteins [BR:
llg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
44548918_01684 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
44548918_01684 (ligA)
MMR (mismatch excision repair)
DNA ligase
44548918_01684 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
44548918_01684 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
SNV51562
LinkDB
All DBs
Position
1:complement(1827265..1829277)
Genome browser
AA seq
670 aa
AA seq
DB search
MSDSIQKKIQNLRNRIQLYDYHYYVLDEPLVPDIEYDRCFRELQALENEHPQYITADSPT
QRVGGTPAGAFEEITHIKPMLSLANVFSEEELHAFLKRVADKLEVDEDSLLFTCEPKLDG
LAVSLTYKEGMLAYAATRGDGAVGENISNNIKTIAAVPLKMMSDNPPELIEIRGEVYMPK
AGFEAYNAKARMTGEKVFANPRNAAAGSLRQLNPAVTASRPLAVYFYGIGACDHFDLPNS
HLEQLQLLRSWGFRTPKETKRAKGFAGCLSCYHELLKGRSELPYEIDGVVYKIDDIELQQ
ELGYLARAPRFACAHKFPASEEMTELLAVDFQVGRTGALTPVARLKPVSVAGVTVSNATL
HNMDEIQRKDIRIGDTVVIRRAGDVIPEVVSVVLEKRPAHTTIISLPEHCPVCGADVIRE
EDEAVARCTGGLFCNAQLKRMLWHYASRRAMSIDGLGAVIIDQLVEEKLIKDVSDLYALD
LETLIRLPRMGRKSAENLLSAIEKSKKTTFARFLYALGIREVGEVSARVLALEFPDIASL
KAASVEKLMEIKDIGPVGAYHIVHFFAQDHNCEVIDKLLDYGVHWPKDERKEFDKQHPFY
GKTVVLTGTLASMGREEAKTHLLALGAKVSGSVSKKTDYVVAGNEAGSKLEKATELGVRV
LNEDEFLALL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatagtattcaaaaaaaaattcagaatttgcgaaatcgtattcagttatatgat
taccattattatgttcttgatgaacctttagtgcctgatattgaatacgaccgctgcttt
agagagttacaggctcttgaaaatgagcatccacagtatattacggctgactccccaacc
caacgggtagggggcactcctgcaggtgcttttgaagagatcacccatatcaaacccatg
ctctccctggcgaatgtcttttcagaagaagagttgcatgcttttctaaaacgtgtggct
gataaattggaggtcgatgaggattctttgctatttacttgcgaaccgaaattggatggt
ttagctgtaagcctgacctataaagaaggtatgctcgcttatgcagccacccgaggagat
ggagccgttggtgaaaacattagcaataatatcaaaaccatcgctgctgtccctctaaaa
atgatgagcgataatcccccggaattgattgaaattcgtggtgaagtatatatgccaaaa
gcaggattcgaggcttacaatgctaaagcaaggatgactggagaaaaggtttttgcaaac
ccacggaatgcagcggctggtagtctgcgacagttgaatccagccgttacagcttcaaga
ccattagccgtttatttttatgggattggtgcttgtgatcattttgatttaccgaatagt
catctagagcaattgcagcttttgcgtagctggggatttagaacccccaaggaaacaaaa
cgagccaaaggctttgcgggttgtctttcttgttaccatgagcttttaaaagggcgttcg
gaactgccttatgagattgatggtgttgtctataagatagatgatatcgaattgcaacaa
gagttaggttatttggctcgtgcccctcgttttgcctgcgcccataaatttccagcaagt
gaagaaatgactgagttattggcggtggattttcaagttggacgcactggggctttgaca
ccagttgcacgattaaaaccggttagcgtagcgggtgtcacggtaagtaatgctaccttg
cataatatggatgaaattcaacgtaaagatattcgtataggggatacggtagttattcgt
cgcgctggtgatgttatcccggaagtggtttcggttgtgcttgaaaaacgacctgcacac
acaacgattatttctcttccagagcattgcccggtgtgtggcgcggatgtcattagggaa
gaggacgaggccgttgctcgctgtacaggaggattattttgcaacgcccaactcaaacgg
atgctctggcattatgcttcacgtagagcaatgtctattgatggtttgggtgcagtaatc
atcgatcagcttgttgaagagaaattaattaaggatgtttcggacctttacgccttggat
ttagaaacattaattcgacttcctagaatgggtcgaaagtcagcagagaacttgctctcg
gccattgaaaagagcaaaaaaaccacattcgcacgttttttgtatgccttaggaattaga
gaggtgggagaggtcagcgcgcgagtcttggctttagaatttcctgatattgcatcttta
aaagcagcttctgttgaaaagttaatggaaataaaggatatcggcccggtaggagcttat
catattgtccatttctttgcacaagaccataactgtgaagtgattgacaaattgctggat
tatggtgtgcattggcctaaagatgagcgaaaagagtttgataaacagcatcctttttac
ggcaaaacggtggttcttactggtacgcttgccagcatgggacgcgaggaggccaaaacc
catctccttgctctaggtgctaaagtgtcagggagtgtttctaaaaaaacggattatgta
gtggcgggtaatgaggcagggtctaaactagaaaaagcaacagaactgggggtaagggta
ttgaatgaagacgaatttcttgctctgctttga
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