Lacipirellula limnantheis: I41_16920
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Entry
I41_16920 CDS
T09857
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llh
Lacipirellula limnantheis
Pathway
llh03030
DNA replication
llh03410
Base excision repair
llh03420
Nucleotide excision repair
llh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I41_16920 (ligA)
03410 Base excision repair
I41_16920 (ligA)
03420 Nucleotide excision repair
I41_16920 (ligA)
03430 Mismatch repair
I41_16920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llh03032
]
I41_16920 (ligA)
03400 DNA repair and recombination proteins [BR:
llh03400
]
I41_16920 (ligA)
Enzymes [BR:
llh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I41_16920 (ligA)
DNA replication proteins [BR:
llh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I41_16920 (ligA)
DNA repair and recombination proteins [BR:
llh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I41_16920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I41_16920 (ligA)
MMR (mismatch excision repair)
DNA ligase
I41_16920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I41_16920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
SHLD2_C
DUF7575
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QDT72512
UniProt:
A0A517TVW7
LinkDB
All DBs
Position
2067279..2069291
Genome browser
AA seq
670 aa
AA seq
DB search
MPDDIQQQLDALRAEIRAHDRAYYVDAAPTISDLEYDRLLSRLKELEAEHPELVTPDSPT
QRVGDAPIPELNSVVHRIPMMSMDNTYSLEELQKYGERTAKLLPGEEIAWDVELKIDGVA
ISITYENGLLIQAATRGDGQVGDDVTHNIRTIGDIPLRLAGDNPPPVVEVRGEVYMNNTD
LADINARRQEAGQKLYANTRNTAAGAVRLLDPRLAAQLKLRFFCHGVGYSEGLAAESHSE
FLKLAKHWGLPATPLVERFADFAAAVAHCESLIERLHDFDFEVDGLVLKVDRFDQRERLG
ATSKAPRWLVAYKFEKYEATTKVNNIFITVGKSGALTPTADLEPVQIAGTTVSRAGLHNV
EEIARKDVRVGDTVVVEKAGKIIPHIVRVEKHLRPDDAVPFVYPTHCPECGSELEKDEGG
VFIRCLNPACPAQLGQRLLYFASRSAMDIEGLGEKLAEQLIAEKYVNDLADLYGLTVERL
TQLERMGAKSAQNLVDNIAASRSRGLARVLNALSIRHVGVRGAATLAGHFGSIDAMLAAS
VEELAAVEEIGPIIAASIHDFLHNEAGQRAIEQLRAAGVDMTAPKRERPPEGPLTGKTVV
VTGTLEKYTREEIEGLIEAYGGKAGKSVSKKTAYLVAGAEAGSKLAKAESLGVPILTEGE
FESLINAKEL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgacattcaacagcaactcgacgccctccgcgccgaaattcgcgcgcacgac
cgcgcttattatgtcgacgccgcgccgacgatcagcgatctcgaatacgaccgcctactc
agtcggcttaaggaactcgaggccgagcatcccgaactcgtcacgcccgacagtccgacg
cagcgcgtcggcgacgcgccgattcctgagttgaactcggtcgtccatcgcatcccgatg
atgtcaatggacaacacctacagcctggaagaactgcagaaatatggcgagcggaccgcc
aagctcctcccaggcgaagagattgcttgggacgtcgaactgaagatcgacggcgtcgcg
atctcgattacctacgaaaacggcctcctcattcaggccgccacgcggggtgacgggcag
gtgggcgacgacgtcactcacaacattcgcacgatcggcgacatcccgctgcgactagcc
ggcgacaacccgcccccggtggtcgaagtccgcggcgaagtttacatgaacaacaccgac
ttggcggatattaacgccagacggcaggaagcgggccagaagctctacgccaacactcgc
aacacggccgccggcgccgtccgcctgctcgacccgaggttggccgcgcaactgaagctc
cggtttttctgccacggcgttggctatagcgaggggctcgcggcggaatcgcattccgag
tttcttaagctcgccaaacattggggcctgccagccacgcctctcgtcgagcgatttgcg
gatttcgccgccgccgtcgcgcattgtgagtcgctgatcgaacggcttcatgatttcgac
ttcgaagtcgacggcctggtgctcaaggtcgaccgcttcgaccaacgcgaacggcttggc
gccacaagtaaagcccctcgttggctcgtcgcctataagttcgagaagtatgaagcgacg
actaaggtgaacaacatcttcatcaccgtcggcaagagcggtgcactcaccccgacggct
gatttggagccggtgcagattgccggaacgacagtaagccgcgctgggctgcacaacgtc
gaagagattgcccgcaaagacgtccgcgtcggcgataccgtcgtcgtcgagaaggcgggc
aagatcatcccgcatatcgtccgcgtcgaaaagcacctacggcccgacgacgctgtgccg
ttcgtctatccgactcactgtcccgagtgcggcagcgaactcgaaaaggatgaagggggc
gtcttcatccgctgtttgaatccggcgtgtcccgcccaactcggccaacggctcctgtac
tttgccagccgatcggcgatggatatcgaaggcctcggcgaaaagctcgctgagcaactc
atcgccgaaaagtacgtcaatgaccttgccgatctctacggcctgaccgtggaacggctg
acgcaactcgaacgcatgggcgccaagtcggcgcagaatctcgttgacaacatcgccgct
agcaggtcgcgaggcttggctcgcgtgctgaacgccctatcgattcgtcacgtcggcgtt
cgcggcgccgcaacgctcgcgggccatttcggctcgatcgacgccatgctggcggcgagc
gtcgaagaactcgccgccgttgaggagatcggcccgattatcgccgccagcatccacgat
tttctccacaacgaggcaggtcagcgcgcgattgagcaactgcgcgccgccggcgtcgac
atgacggcgcccaagcgcgaacgtccgcccgaaggtccgctcaccggcaaaacggtcgtc
gtcactgggacgctcgaaaaatacacccgcgaagagatcgaagggctcatcgaagcctac
ggcggcaaggccggcaaaagcgtctctaagaagacggcctatttggttgccggcgctgag
gcgggcagcaagctggcgaaggcggaaagccttggcgtgccgattctgactgaaggtgaa
ttcgagagccttataaacgccaaagaattgtga
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