Lactococcus lactis subsp. cremoris UC509.9: uc509_0451
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Entry
uc509_0451 CDS
T02415
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lli
Lactococcus lactis subsp. cremoris UC509.9
Pathway
lli03030
DNA replication
lli03410
Base excision repair
lli03420
Nucleotide excision repair
lli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
uc509_0451 (ligA)
03410 Base excision repair
uc509_0451 (ligA)
03420 Nucleotide excision repair
uc509_0451 (ligA)
03430 Mismatch repair
uc509_0451 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lli03032
]
uc509_0451 (ligA)
03400 DNA repair and recombination proteins [BR:
lli03400
]
uc509_0451 (ligA)
Enzymes [BR:
lli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
uc509_0451 (ligA)
DNA replication proteins [BR:
lli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
uc509_0451 (ligA)
DNA repair and recombination proteins [BR:
lli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
uc509_0451 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
uc509_0451 (ligA)
MMR (mismatch excision repair)
DNA ligase
uc509_0451 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
uc509_0451 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_ligase
Zn_ribbon_PF0610
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFW91101
LinkDB
All DBs
Position
444883..446943
Genome browser
AA seq
686 aa
AA seq
DB search
MNIESKIKEFTDQLNQFAYEYYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRADSPTHR
TGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRKEIVNPEYICELKIDGLSLSLY
YENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAIDIVVRGEAYLPRQNFAKLNAE
RELAGAAPFSNPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG
FQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEELGFTVKAPRWA
IAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIQEKDIR
NHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLRKTHRANKYVWTRFGRRSVEKGLVFSKRE
DNRVKIPTQCPECDSDLIHFEDEVALRCVNPLCPAQIREKLIHFASRDAMNIVGLGPSVI
SQLFDKKLVTDVADLYQLTVEDLLTLDKVKETLAQKIVSAIAQSRENSAEKLLFGLGIRH
VGGKAAKLLLERFANLRALSQASEEEISEIPSLGGVIATAVVSYFETAGAKTLLDELENA
GLNFAYLGAVNVEGILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVAG
EEAGSKLTKAQDLGIEIWSEQDLLDL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaaaaattaaagagtttacggatcagcttaatcaatttgcctatgaa
tactatactttagatgagccgtctgtagaggatagtgagtacgaccgcctatatcatgaa
ttagtgaaattggagcaagaaaatcctcagttagtgagagcagattctcccactcatcgg
actggtggcgtcattttagatggctttgtgaaatttcgacatccttataatctttatagt
ttaggggacgttttttcgcgggaagaattagccctttgggaagagcgtgtccgcaaagag
attgttaatccagaatacatttgtgaattaaaaatcgatggtctttcgctatctctttac
tatgagaatggcttactcgtgactgcagcaacccgtggtgatggaacaactggtgaaaat
atcacagaaaatgtaaaacggattaaagacgttcccttaaaattaaaagaagccattgat
attgtggtgcggggagaggcttatttaccgcgtcaaaattttgctaaattaaatgctgag
cgtgaacttgcaggagcagctcctttttccaatcctagaaatgcagcagcagggacttta
cgtcagctagatacaaaaatcgtagctaaacgtggtttggcaactttcctttatcaagaa
gcaagtccggcaaccaatgatacgcaagaagaagtattagaatatttcgaagaacttgga
tttcaagtcaatcctgagcgtaaatttgctcgaaatttggatgaaatatgggaatttatt
gaagaagcaactcgcttgcgtgacgaattgccttacgatattgatggtgtggttatcaaa
gtcaataatcttgctgagcaagaggaattaggttttacggttaaagcccctcgatgggct
atcgcatataaatttccagctgaacaggcggaaacggaaattttatctgttgattggacg
gtcggccgtacaggcgttgtcacaccaacagcaaatatgacacctgttcttttggcacaa
acaacggttgcaagggcaactttgcataatgtggattatatccaagaaaaagatatccgt
aatcatgataaagtaatgatttacaaggcgggagatattattcctaaagttggtaaggtc
cttctggagaagcgaaaaccagctaaacatcttcgtaaaactcatcgagctaacaaatat
gtttggacaagatttggtagacgaagtgtagagaaaggattagttttctcaaagcgagaa
gataatcgtgtaaaaattccaactcaatgtccggaatgtgattcagatttgatccatttt
gaggatgaggtggcattacgttgtgttaatcctttgtgtcctgctcaaatccgagagaag
ttaattcattttgctagtcgtgatgcgatgaatattgttggcttggggccatcagtaatt
tcacaactttttgataaaaaattagtcactgatgttgctgatttatatcaattgaccgtt
gaagatttactgaccctcgataaagtcaaagaaactttggctcaaaaaattgtatctgca
attgcgcaaagccgtgaaaattcagcggaaaaattactttttggtttaggaattcgccac
gtaggtggtaaagctgctaaattattattagaacgttttgctaatcttagagctctttct
caagcaagtgaagaagaaatttcggaaattccgtcacttggtggggtaattgctacagct
gtggtttcatattttgaaacagctggagccaaaactttactggatgaactagagaatgct
ggtttgaattttgcatatttaggcgcagttaatgttgaaggaatattatcggggaagacg
gttgttttgactggtaaattaacgaccttgaaacgaaaagaggctaaagaaaaattggaa
gctttaggagcaaatgtttcgggctctgtttctaagaagactgatttagtggttgctggt
gaagaagctggaagtaaattgacaaaagctcaggatttaggaatcgaaatctggtcagaa
caagatttacttgatttataa
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