Lactococcus lactis AI06: LG36_0418
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Entry
LG36_0418 CDS
T03480
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llj
Lactococcus lactis AI06
Pathway
llj03030
DNA replication
llj03410
Base excision repair
llj03420
Nucleotide excision repair
llj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG36_0418 (ligA)
03410 Base excision repair
LG36_0418 (ligA)
03420 Nucleotide excision repair
LG36_0418 (ligA)
03430 Mismatch repair
LG36_0418 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llj03032
]
LG36_0418 (ligA)
03400 DNA repair and recombination proteins [BR:
llj03400
]
LG36_0418 (ligA)
Enzymes [BR:
llj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG36_0418 (ligA)
DNA replication proteins [BR:
llj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG36_0418 (ligA)
DNA repair and recombination proteins [BR:
llj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG36_0418 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG36_0418 (ligA)
MMR (mismatch excision repair)
DNA ligase
LG36_0418 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG36_0418 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_ligase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AIS03018
LinkDB
All DBs
Position
443623..445587
Genome browser
AA seq
654 aa
AA seq
DB search
MNIESKIKELTEKLNQYAYEYYTLDEPSVEDSEYDRLYQELVKLEAENPQLTRADSPTHR
TGGVILDGFVKFRHPYNLYSLGDVFSREELAVWEERVRKEIANPEYICELKIDGLSLSLY
YENGFLVTAATRGDGTTGENITENVKRIKDVPLKLKDAIDIVVRGEAYLPRKNFAKLNKE
RELEGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG
FQVNPERKFARNMDEIWEFIEEATRLRDELPYDIDGVVVKVNNLAEQEELGFTVKAPRWA
IAYKFPAEQAETEILSVDWTVGRTGVVTPTANMIPVLLAQTTVARATLHNVDYIEEKDIR
IGDHVLIYKAGDIIPKVGKVLLDKRPEGLEALEIPTNCPECGSELIHFEDEVALRCVNPL
CPAQIREKLIHFASRDAMNIVGLGPSVISQLFDKKLVADVADLYQLTIEDLLTLDKVKET
LAQKIVSAIAQSRENSAEKLLFGLGIRHVGGKAAKLLMERFANLRALSKATEEEISEIPS
LGGVIATAVVSYFETDGAKILLDELENAGLNFDYLGAVNVEGILSGKTVVLTGKLTTLKR
SEAKEKLEALGANVSGSVSKKTDLVVAGEEAGSKLTKAQDLGIEIWSEQDLLDL
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaaaaattaaagagcttacggaaaaattaaatcagtatgcttatgaa
tattatactttagatgagccttcggtagaagacagtgagtacgatcgactctatcaagaa
ttggtaaaattggaggctgaaaatccacaactaactagagcggattctccaacgcaccga
acaggtggggttattttagatggctttgttaaattcagacatccttataatctttatagt
ttaggagacgttttttcgcgcgaagaattggcggtttgggaagaacgagtccgcaaggaa
attgctaatccagagtatatttgtgaattaaaaattgatggtctttcattgtctctttat
tatgagaatgggttccttgtgactgcagcaactcgaggcgatggaacaacgggtgaaaac
atcacagaaaatgtgaaacgaattaaagatgttcctttaaaactcaaagatgctatcgat
attgtggtacgtggtgaagcttatcttccgcgtaagaattttgctaaacttaataaagag
cgtgaacttgaaggagcagctccttttgctaatccaagaaatgcggcagctgggacttta
cgtcaacttgatacaaaaatagttgctaaacgtggtcttgcaactttcctttatcaagaa
gcaagtccagctaccaacgatactcaagaagaagtcttagaatattttgaagaacttggt
tttcaagtcaatcctgaacgtaaatttgctcgaaatatggatgaaatttgggaatttatt
gaagaggctacacgtctgcgtgacgaactcccctatgatattgatggagttgttgtgaaa
gttaataatcttgcagagcaagaagaattaggttttacagttaaggcaccgcgctgggcg
attgcttataaatttccagctgaacaagcagaaacagaaattttgtctgttgactggact
gtcggtcggacaggagttgtcaccccaacggcaaatatgatcccggttcttttagcacag
acgacggttgctcgagcaactttgcacaatgtggattatattgaagaaaaggatatccgt
attggcgatcatgtcttgatttataaggcgggtgatattattccgaaggttgggaaagtg
cttttggacaaacggccagaaggtcttgaagctttagaaattcctacaaattgtcctgaa
tgtggttcagagttaattcattttgaagatgaagtggctttacgctgtgttaacccctta
tgtccggcgcaaattcgagaaaaactaattcattttgctagtcgtgatgctatgaatatt
gtgggcttaggcccatcagtcatttcacaactttttgataaaaaattggtggctgatgtt
gctgatttatatcaattgacgattgaagatttactgacattagataaggtcaaagaaact
ttggctcaaaaaattgtgtcagcaattgcgcaaagtcgtgaaaattcggcagaaaaatta
ttgtttggtttaggaattcgtcatgttggtggtaaagcggctaaattgcttatggagcgt
tttgctaatcttcgagcgctttctaaagccacagaagaagaaatttctgaaattccttct
ttaggtggagtcattgctacggctgttgtttcttattttgaaactgacggagcaaaaatt
ttactggatgaacttgaaaatgctggtttaaattttgattatttaggtgctgttaatgtt
gaaggaatattatcaggtaagacagttgtcttaacaggtaaattgacgactttgaagcgc
tcggaagcaaaagaaaaattggaagcattgggagcaaatgtttctggttctgtttctaag
aaaacggatttggtagtcgccggagaagaagcaggtagcaaactgacaaaagctcaagac
ttaggaattgaaatctggtcagagcaagatttgcttgatttatag
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