Lineus longissimus (bootlace worm): 135487055
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Entry
135487055 CDS
T09977
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
135487055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llon03400
]
135487055
Enzymes [BR:
llon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135487055
DNA repair and recombination proteins [BR:
llon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135487055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
LIG3_BRCT
PTCB-BRCT
mRNA_cap_enzyme
Sigma70_r1_1
Motif
Other DBs
NCBI-GeneID:
135487055
NCBI-ProteinID:
XP_064626451
LinkDB
All DBs
Position
4:24871241..24878092
Genome browser
AA seq
916 aa
AA seq
DB search
MVATVASKVPFSEIGGLLEKIEKLSAKKAVSETKKSLVRDFIKSWREFHDKLHADDPNTT
DSFYAAMRLLVPQLEKERAAYGIKEHTLAKHMIDVLGLAKEGADAQKLLNYKAPKHAKGN
VGDFASVAYFVLKNRCPEKGSLTIEEVNEHLDSISINNAKKNKQGVLKSIMHLLKNMSAL
EQKWLIRMIMKELKCGISQQTVFALFHEDAEDLYNVTNSLEKVCLQLRDPNVRLHEIGIS
LFLPFRPMLGERAAPNKVEKLMDSKDFFIETKYDGERMQLHRDEGEYKYFSRGGNDYTGT
YGNDMYHGNFTSYIDNCFKPGVKSCILDGEMMGYNPETKTLGSKGENFDIKSTKEMENYH
PCYCVFDVLMLNGKVWSNKPLTERLEALVEIFNPVEGRIFLAERRKGRTNQDVADALNEA
IDGREEGIMVKRPDSIYKPNTRKGGWFKIKPEYVGGLMDELDVCIIGGYFGVGHRAGMMS
HFLCGVAEAAPDGEHPTVFQSFCKVGSGYSKKELFEFNRKLASHWKPFDKKNPPRCIVLA
SGFKEKPDAYIHPSNSYIVQVKAAEIIDSDRFKTGCTLRFPRVEKIRDDKHWYDSMTTAD
VEELKQKSGGKLASGFALADDDEGPSKKKRRIVQRNERPTVSSQFRGVDTTAIKKTSEVF
QDLEFCIMNGTAEFSKAHLEQKVVEFGGQIVQNADEQSTLCVVADKIILKVRNYIKKDCY
DVVKATWLARCIEAKRFIPWVPSDMHHTSPKTTRKFAFDYDAYGDSYYEDTSVQQLKRVF
QKVEAEGAAKPVSQEEIAEFESVYFPDDSPYGLFRTCRFYMDNKLAVDDVDSVIPDCSLE
LTALDIRFHGGTVVDKLDKKVSHLVVHSSDLSRVQELRNLSKKRERNFHIVTEDWVKDCI
ESDTLKTERYYEPPAS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaacagttgcatcaaaagtccctttctcagagattggtggtttgctcgaaaaa
atcgaaaagctatcggccaaaaaagctgtttctgaaaccaagaaaagcctcgtccgggat
ttcatcaaatcatggcgagaattccatgacaaacttcatgctgacgaccccaacacgact
gattcgttctatgcagccatgaggctacttgttccacaactagagaaagaacgagcggca
tacggtatcaaagagcacactttagccaaacatatgattgatgttcttggtcttgcaaag
gagggcgctgatgcacagaagttgttgaattacaaggctccaaaacatgccaagggtaat
gttggtgacttcgcaagcgtggcatatttcgtacttaagaatcgatgtccagagaagggg
tccctaaccattgaagaagtaaatgagcaccttgactcaatatccatcaacaatgccaag
aagaacaaacagggggtcttgaaaagcatcatgcatctgttgaagaatatgtcggccctc
gaacagaagtggttaattcgtatgatcatgaaggagctcaaatgtggcatcagtcagcag
acggtcttcgctctgttccatgaggatgctgaggacctttataatgttaccaacagcttg
gagaaggtttgcctgcagctccgtgatccaaatgttcgactccacgagattggcatttct
ctcttccttcctttccgtcctatgcttggcgagagagctgctccaaataaagtagaaaaa
ctcatggattcaaaagatttcttcattgagacgaaatatgacggtgaaaggatgcagctg
catagagatgagggcgaatacaaatacttctccagaggtggcaatgactacaccggtaca
tatggtaatgacatgtaccatggcaacttcacaagctacattgataactgcttcaagcca
ggtgtcaagtcgtgcattctggatggcgagatgatgggttacaacccagaaactaaaact
cttggttccaagggtgaaaactttgacatcaaaagcaccaaggaaatggagaactaccat
ccatgttactgtgtatttgacgtcctgatgttgaatgggaaagtctggtcaaataaaccc
ctcactgagagactggaggcattggtggagatcttcaatcctgtcgagggacgcatattt
cttgctgagaggaggaaagggagaactaatcaagatgtagcagacgccttgaatgaggcc
atcgatgggcgagaggaagggatcatggtgaagagaccagactccatctacaagcccaac
acaaggaaaggtggctggttcaagatcaagcccgagtacgtcggaggcctaatggacgag
ctcgacgtctgtatcataggtggttattttggtgtcggtcaccgagctggtatgatgtca
catttcctgtgtggtgttgccgaggcggcccctgatggtgaacatccgactgtgtttcag
tcattttgtaaggtgggctcgggttattctaagaaagagttgtttgaatttaacaggaaa
cttgccagccattggaaaccttttgacaagaagaaccctccgagatgtattgtccttgcc
tcagggttcaaggagaaaccggatgcttacattcacccatccaattcatacattgttcag
gtgaaagccgctgagataatagacagtgatcggttcaaaacaggctgtacccttcggttc
ccacgagttgagaagatacgggatgacaaacattggtatgactccatgacgacggctgat
gtggaggaattaaaacagaaatctggtggaaaacttgcgagtggatttgctctcgctgat
gatgatgagggtccatcgaagaagaagcggaggattgtccagagaaatgaacgaccaacc
gtatcatcgcagtttagaggggtcgatactacggctatcaaaaagacatctgaagtgttt
caagatcttgagttctgcatcatgaacggtaccgccgagttctctaaagcccacctggag
cagaaggttgttgagtttggtgggcagatcgtacagaatgctgacgaacagagcaccttg
tgtgtggtggcggataagatcatcctcaaagtcaggaactatatcaagaaagactgttat
gatgtggtgaaagcgacttggttggcgaggtgtattgaagcaaagagatttataccatgg
gtaccatctgacatgcaccacacaagccccaaaacaaccaggaagtttgccttcgactat
gatgcctatggagacagctattatgaagatacgtctgtacagcaactcaagagagtcttt
cagaaggtcgaagctgagggtgctgccaagccagtctcccaggaagaaatagctgaattt
gaatctgtctacttccctgatgactctccttatggactattcaggacatgccgattctat
atggataacaagttggcagtagatgatgtggattctgtgataccggactgcagccttgaa
ctgacagcactggatatacgatttcatggtgggacggtcgtggataaacttgacaagaaa
gtttcacatcttgtagtacattccagtgatttgtcaagagtgcaggaattacggaatctt
tcaaagaaaagagagagaaactttcacatcgttactgaggattgggttaaggactgtata
gaatcagatacattgaaaactgagcggtattacgaaccaccagcctcatag
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