Litorivicinus lipolyticus: GH975_05405
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Entry
GH975_05405 CDS
T06278
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llp
Litorivicinus lipolyticus
Pathway
llp03030
DNA replication
llp03410
Base excision repair
llp03420
Nucleotide excision repair
llp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GH975_05405 (ligA)
03410 Base excision repair
GH975_05405 (ligA)
03420 Nucleotide excision repair
GH975_05405 (ligA)
03430 Mismatch repair
GH975_05405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llp03032
]
GH975_05405 (ligA)
03400 DNA repair and recombination proteins [BR:
llp03400
]
GH975_05405 (ligA)
Enzymes [BR:
llp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GH975_05405 (ligA)
DNA replication proteins [BR:
llp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GH975_05405 (ligA)
DNA repair and recombination proteins [BR:
llp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GH975_05405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GH975_05405 (ligA)
MMR (mismatch excision repair)
DNA ligase
GH975_05405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GH975_05405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF7500
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QGG80043
UniProt:
A0A5Q2Q9Z8
LinkDB
All DBs
Position
1045783..1047801
Genome browser
AA seq
672 aa
AA seq
DB search
MHDRSSYLEAVSRLRTYDYHYHVLDEPLVGDSQYDDELARLKASEKAHPEWLVSHSPTQT
VGFSALAQFDKSTHHQPMLSLDNAFDAASLVAWYERGLTRLRKDHHLASPPRINCEPKLD
GVAINLRYEAGVLVQAATRGDGSTGEDITLNAKTLRALPHQLQNGPWPASIEIRGEVFMP
RKGFDAMNRRLAATGLKTFVNPRNAAAGSLRQLDPKVTASRPLDLYVYGAGAVVGDLDAA
THSETLAQFERWGLPVNPETRCVDSIEAAEAYYEYLSRRRAELSYEIDGIVYKVDEHQWQ
RELGAVAKSPRWAIARKFPAQEAATQLQAIDWQVGRTGAVTPVARLQPVFVGGVTVSNAT
LHNVDEIARLGVRIGDQVMIRRAGDVIPQIVRVIDAQRADRQPALVLPTQCPVCDSPLER
QADEAVLRCTAGWVCKAQRLTALAHFVSRKAMDVDGVGSKLLQALVDQQLIQRPADLYRL
QPATLMQLERMGEKSAAKVVESLARSKVTTFARFLFALGIREVGERTAQTLAGQFDLAGL
RAASVERLIEVDDVGPVVAQHLVDFFHNPAQQQWVDDLLSCGVEWPLEDGPISDVLAGQT
WVLTGSLESLTRDQAGERLRALGAKVAGSVSKNTSQLVAGPGAGSKLSKAESLGVPVMDE
AELIAKLKGWEA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatcggagcagttacctagaagcggtgtcacggcttcgcacctacgactatcat
tatcatgtgttggatgagccgctggtcggcgacagccagtacgacgacgagctggcacgc
cttaaggccagcgaaaaggcccatccggagtggctggtcagtcacagtccaacccaaacc
gtgggtttttcagcacttgcgcagttcgacaaaagcacccaccaccagccgatgctcagc
ttggacaatgcctttgacgcggcatcgctggtggcgtggtatgaacgcggtctgacgcgg
ctgcgcaaggaccatcacttggcgtcgccgccgcgcattaactgtgagccgaaactggac
ggtgttgccatcaacctgcgctacgaggccggggttttggtccaagccgcgacccgaggg
gacggcagcacgggcgaagacatcaccctcaatgcaaagaccctacgtgcgttgccgcat
cagctacaaaacggcccgtggcccgcgtcgatagagattcgtggcgaagtgttcatgcca
cgcaaaggttttgatgcgatgaaccggcgcttggccgcgaccggccttaagacctttgtt
aacccgcgcaacgccgccgcaggtagcctgcgtcagctggaccctaaggtgaccgccagt
cggcccctggatttgtacgtgtatggcgccggcgccgtggttggcgatttggacgccgct
acccacagcgaaaccttggcccagttcgagcgatggggcttgccggtcaatccggaaacc
cgctgtgttgattcgatcgaggccgccgaggcttactacgagtacctcagtcggcgtcgc
gccgagcttagctacgaaattgacggcattgtttacaaagtcgacgagcatcaatggcag
cgtgagctaggcgcggtggcaaagtcaccacgctgggccattgcgcgcaaatttccagcc
caagaagccgccactcaattgcaagcgattgactggcaagtgggtcgcaccggtgccgtc
actcccgttgcgcgtttgcagccggtgtttgttggtggcgtcacggtcagcaacgcgacg
ctgcacaacgtcgatgaaatcgcccgtcttggggtccggattggcgatcaggtcatgatt
cgtcgcgccggtgacgttatccctcagatcgttcgggtgattgacgcgcaacgcgccgat
cgccaacccgccctggttttgccgacccagtgtccggtctgtgacagcccgttggagcgt
caagccgacgaagcggtgctgcgttgcaccgcaggctgggtgtgtaaggctcagcgattg
accgcactggcgcactttgtgtcgcgcaaagcaatggacgtggatggcgtcggcagcaag
ctgctgcaggccttggtcgatcagcagctgatccagcgtccggcggacctgtaccggttg
caaccggcaaccctgatgcagcttgagcgcatgggcgaaaaaagtgccgccaaggtggtt
gaatcgttagcccgcagcaaagtgactacctttgcccgtttcctgtttgccctgggcatt
cgagaagtcggcgagcgcaccgcgcaaaccctagccggacagtttgatttggccggttta
cgggccgcgagcgttgagcgcctgatcgaggtcgacgacgtcggcccggtagtggcccag
cacctggtcgattttttccacaacccggcgcaacagcagtgggtcgatgatctactgagc
tgcggcgttgagtggccgcttgaggatggaccaatatcggacgtgctggcgggccagacc
tgggtcttgaccggctcgctggagtcgctgacccgagaccaggcgggcgagcggctgcgg
gcgctgggggccaaggtggcaggcagtgtgtctaaaaatacctcgcagttggtcgccggt
cccggcgcgggctcgaaactgagcaaggcagaatcgctgggagtgccggtgatggacgag
gctgagctgattgctaaattgaaggggtgggaagcgtga
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