Lactococcus lactis subsp. cremoris A76: llh_2465
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Entry
llh_2465 CDS
T01965
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llr
Lactococcus lactis subsp. cremoris A76
Pathway
llr03030
DNA replication
llr03410
Base excision repair
llr03420
Nucleotide excision repair
llr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
llh_2465
03410 Base excision repair
llh_2465
03420 Nucleotide excision repair
llh_2465
03430 Mismatch repair
llh_2465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llr03032
]
llh_2465
03400 DNA repair and recombination proteins [BR:
llr03400
]
llh_2465
Enzymes [BR:
llr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
llh_2465
DNA replication proteins [BR:
llr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
llh_2465
DNA repair and recombination proteins [BR:
llr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
llh_2465
NER (nucleotide excision repair)
GGR (global genome repair) factors
llh_2465
MMR (mismatch excision repair)
DNA ligase
llh_2465
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
llh_2465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_ligase
Zn_ribbon_PF0610
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEU39669
LinkDB
All DBs
Position
472106..474166
Genome browser
AA seq
686 aa
AA seq
DB search
MNIESKIKEFTDQLNQFAYEYYTLDEPSVEDSEYDRLYHELVKLEQENPQLVRADSPTHR
TGGVILDGFVKFRHPYNLYSLGDVFSREELALWEERVRKEIVNPEYICELKIDGLSLSLY
YENGLLVTAATRGDGTTGENITENVKRIKDVPLKLKEAIDIVVRGEAYLPRQNFAKLNAE
RELAGAAPFANPRNAAAGTLRQLDTKIVAKRGLATFLYQEASPATNDTQEEVLEYFEELG
FQVNPERKFARNLDEIWEFIEEATRLRDELPYDIDGVVIKVNNLAEQEELGFTVKAPRWA
IAYKFPAEQAETEILSVDWTVGRTGVVTPTANMTPVLLAQTTVARATLHNVDYIQEKDIR
NHDKVMIYKAGDIIPKVGKVLLEKRKPAKHLRKTHRANKYVWTRFGRRSVEKGLVFSKRE
DNRVKIPTQCPECDSDLIHFEDEVALRCVNPLCPAQIREKLIHFASRDAMNIVGLGPSVI
SQLFDKKLVTDVADLYQLTVEDLLTLDKVKETLAQKIVSAIAQSRENSAEKLLFGLGIRH
VGGKAAKLLLERFANLRALSQASEEEISEIPSLGGVIATAVVSYFETAGAKTLLDELENA
GLNFAYLGAVNVEGILSGKTVVLTGKLTTLKRKEAKEKLEALGANVSGSVSKKTDLVVAG
EEAGSKLTKAQDLGIEIWSEQDLLDL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaaaaattaaagagtttacggatcagcttaatcaatttgcctatgaa
tactatactttagatgagccgtctgtagaggatagtgagtacgaccgcctatatcatgaa
ttagtgaaattggagcaagaaaatcctcagttagtgagagcagattctcccactcatcgg
actggtggcgtcattttagatggctttgtgaaatttcgacatccttataatctttatagt
ttaggggacgttttttcgcgggaagaattagccctttgggaagagcgtgtccgcaaagag
attgttaatccagaatacatttgtgaattaaaaatcgatggtctttcgctatctctttac
tatgagaatggcttactcgtgactgcagcaacccgtggtgatggaacaactggtgaaaat
atcacagaaaatgtaaaacggattaaagacgttcccttaaaattaaaagaagccattgat
attgtggtgcggggagaggcttatttaccgcgtcaaaattttgctaaattaaatgctgag
cgtgaacttgcaggagcagctccttttgccaatcctagaaatgcagcagcagggacttta
cgtcagctagatacaaaaatcgtagctaaacgtggtttggcaactttcctttatcaagaa
gcaagtccggcaaccaatgatacgcaagaagaagtattagaatatttcgaagaacttgga
tttcaagtcaatcctgagcgtaaatttgctcgaaatttggatgaaatatgggaatttatt
gaagaagcaactcgcttgcgtgacgaattgccttacgatattgatggtgtggttatcaaa
gtcaataatcttgctgagcaagaggaattaggttttacggttaaagcccctcgatgggct
atcgcatataaatttccagctgaacaggcggaaacggaaattttatctgttgattggacg
gtcggccgtacaggcgttgtcacaccaacagcaaatatgacacctgttcttttggcgcaa
acaacggttgcaagggcaactttgcataatgtggattatatccaagaaaaagatatccgt
aatcatgataaagtaatgatttacaaggcgggagatattattcctaaagttggtaaggtc
cttctggagaagcgaaaaccagctaaacatcttcgtaaaactcatcgagctaacaaatat
gtttggacaagatttggtagacgaagtgtagagaaaggattagttttctcaaagcgagaa
gataatcgtgtaaaaattccaactcaatgtccggaatgtgattcagatttgatccatttt
gaggatgaggtggcattacgttgtgttaatcctttgtgtcctgctcaaatccgagagaag
ttaattcattttgctagtcgtgatgcgatgaatattgttggcttggggccatcagtaatt
tcacaactttttgataaaaaattagtcactgatgttgctgatttatatcaattgaccgtt
gaagatttactgaccctcgataaagtcaaagaaactttggctcaaaaaattgtatctgca
attgcgcaaagccgtgaaaattcagcggaaaaattactttttggtttaggaattcgccac
gtaggtggtaaagctgctaaattattattagaacgttttgctaatcttagagctctttct
caagcaagtgaagaagaaatttcggaaattccgtcacttggtggggtaattgctacagct
gtggtttcatattttgaaacagctggagccaaaactttactggatgaactagagaatgct
ggtttgaattttgcatatttaggcgcagttaatgttgaaggaatattatcggggaagacg
gttgttttgactggtaaattaacgaccttgaaacgaaaagaggctaaagaaaaattggaa
gctttaggagcaaatgtttcgggctctgtttctaagaagactgatttagtggttgctggt
gaagaagctggaagtaaattgacaaaagctcaggatttaggaatcgaaatctggtcagaa
caagatttacttgatttataa
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