KEGG   Labilithrix luteola: AKJ09_03379
Entry
AKJ09_03379       CDS       T04033                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
llu  Labilithrix luteola
Pathway
llu03030  DNA replication
llu03410  Base excision repair
llu03420  Nucleotide excision repair
llu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:llu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AKJ09_03379
   03410 Base excision repair
    AKJ09_03379
   03420 Nucleotide excision repair
    AKJ09_03379
   03430 Mismatch repair
    AKJ09_03379
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:llu03032]
    AKJ09_03379
   03400 DNA repair and recombination proteins [BR:llu03400]
    AKJ09_03379
Enzymes [BR:llu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AKJ09_03379
DNA replication proteins [BR:llu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AKJ09_03379
DNA repair and recombination proteins [BR:llu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AKJ09_03379
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AKJ09_03379
   MMR (mismatch excision repair)
    DNA ligase
     AKJ09_03379
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AKJ09_03379
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT RNA_ligase BRCT_2 Ogr_Delta
Other DBs
NCBI-ProteinID: AKU96715
UniProt: A0A0K1PT59
LinkDB
Position
complement(3432768..3434795)
AA seq 675 aa
MTPQRRHAELVHSIEAHNYRYYVLDDPSVTDAEFDTLMVELKALEKEHPELVTPDSPSQR
VGGEARANVTKIKREYRMMSLDNAYSAADMGEFHRRVTEGLRDGDVPTFAIEPKLDGASI
EVVYEGGRMVQATTRGDGVTGEDITPNVRTIRGVPSRIKHDKKLTLRGEVVIYRKDLDAL
NADRIAAGLEPFANPRNAAAGAVRMLDPREVAQRPLRVIFYQAVEGPEAKPTHVETLNWL
ADLGLPTHRRETVTPWEGVMDAIAAIDHARKTYPYETDGAVVKVDSYRQQDALGSTSKFP
KWAIAYKFPAEQAVTTVRDIIVQVGRTGALTPVAIMDPVELAGTTVSRASLHNGEQIRLL
DVHVGDRVFIQKAGEIIPQVLGVESRAREAGSAHFKMPTHCPECGTAVVMRLREEGKPEL
GAEATTRCPNRQCPAQVRGRILFFASRSAMAIDHLGDSLVDQLVGKELVKDVADLYDLDV
EQVAGLERMGKKSAENVVKSVGASRDRTLDRLLCGLGIPQIGQVAARQLAQELVTLEGTL
ALSEEEAREKVSGIHGFGPKMVDSVIDFLKNEDERKLMKKLLDRHVGQPQPREVVATEGP
LVGKSFCVTGVLTRKREDVHALLRAAGGTIFDSVKKGTTYLVAGDKTGKTKLDQAKKFGV
QVISEEEMDKLLAGT
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgacaccgcagcgacgccacgcagagctcgtccactccatcgaagcccacaattaccgc
tattacgtgctcgacgacccgagcgtgaccgacgccgaattcgacaccctgatggtggag
ctgaaggcgctcgagaaggagcaccccgagctcgtcactccggattcaccttcgcaacgc
gtcggaggtgaagcgcgcgcgaacgtgacgaagatcaagcgcgagtaccgcatgatgtca
ctcgacaatgcgtactcggccgccgacatgggcgagtttcaccgccgtgtcaccgaaggt
ttgcgcgacggtgacgtacccacgttcgccatcgagccgaagctcgacggagcgagcatc
gaggtcgtctacgaagggggtcgcatggtgcaggccaccacgcgtggcgatggtgtcacc
ggcgaagacatcacgccgaacgtgcgcaccatccgcggcgttccctcgcgtatcaagcac
gacaaaaagctcaccctgcgcggtgaggtcgtcatctaccgcaaggacctcgacgccctg
aacgccgaccgcatcgcggcggggctcgagccctttgccaatccgcgcaatgccgctgcc
ggtgccgtgcgcatgctcgatccgcgcgaagtcgcgcagcgccctctgcgcgtcatcttc
taccaggcggtcgagggccccgaggccaagcccacgcacgtcgagacgctcaactggctc
gccgacctggggcttcccacgcatcgccgcgagacggtcacgccgtgggaaggcgtgatg
gatgccatcgccgccatcgaccatgcgcgcaagacgtatccgtacgagaccgacggcgcg
gtcgttaaggtcgacagctatcgccagcaagacgcgctcggctccacttcgaagttcccg
aagtgggcgatcgcctacaaattcccagccgaacaggcggtcaccaccgtgcgcgacatc
atcgtgcaggtcggtcgtaccggcgcgctcacgcccgtggcgatcatggatcccgtggag
ctcgccggcacaacggtgagccgtgcctcgctccacaacggcgagcagattcgcttgctc
gacgtgcacgtgggcgatcgcgtcttcatccagaaagcgggcgagatcatcccgcaggtc
ttgggtgtcgagtcacgcgctcgcgaggcgggctcggcgcacttcaagatgcccacccac
tgccccgagtgcggaacggccgtcgtcatgcgccttcgtgaagagggcaagccggagctc
ggcgcagaggccaccacgcgctgcccgaatcgccagtgtccggcgcaggttcgcggtcga
atcctgttctttgcaagtcgctccgcgatggccatcgaccacctcggcgactcgctcgtc
gatcagctcgtgggcaaggagctcgtgaaagacgtcgccgacctctacgacctcgacgtc
gaacaggtcgccggtctcgagcgcatgggcaagaagagcgcggagaacgtggtcaaatcg
gtcggcgcctcgcgcgatcgcacgctcgatcgcctgctctgcggcctcggcattccgcag
atcggccaggtcgccgcgcgtcagctcgcgcaggagctcgtcaccctcgaaggcacgctc
gctctctccgaagaggaggcgcgcgagaaggtctccggcatccacggcttcggtccgaag
atggtcgacagcgtgatcgacttcttgaagaacgaagacgagcggaagctgatgaagaag
ctcctcgatcgtcacgtggggcagccgcagccgcgcgaggtcgtggctacggaagggccg
ctcgtcggcaagagcttctgcgtgacgggcgttctcacgcgcaagcgcgaagacgtccac
gccttgctccgcgccgcgggcggaacgattttcgactcggtgaagaagggcaccacctac
ctcgtggccggcgacaagacgggcaagaccaagctcgatcaggccaagaagttcggcgtg
caggtcatctccgaagaggagatggacaagcttctcgccggaacctga

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