KEGG   Lutra lutra (Eurasian river otter): 125083298
Entry
125083298         CDS       T08100                                 
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
llv  Lutra lutra (Eurasian river otter)
Pathway
llv04010  MAPK signaling pathway
llv04064  NF-kappa B signaling pathway
llv04071  Sphingolipid signaling pathway
llv04137  Mitophagy - animal
llv04141  Protein processing in endoplasmic reticulum
llv04210  Apoptosis
llv04217  Necroptosis
llv04380  Osteoclast differentiation
llv04621  NOD-like receptor signaling pathway
llv04622  RIG-I-like receptor signaling pathway
llv04657  IL-17 signaling pathway
llv04668  TNF signaling pathway
llv04920  Adipocytokine signaling pathway
llv04932  Non-alcoholic fatty liver disease
llv05010  Alzheimer disease
llv05014  Amyotrophic lateral sclerosis
llv05016  Huntington disease
llv05017  Spinocerebellar ataxia
llv05022  Pathways of neurodegeneration - multiple diseases
llv05132  Salmonella infection
llv05135  Yersinia infection
llv05160  Hepatitis C
llv05163  Human cytomegalovirus infection
llv05167  Kaposi sarcoma-associated herpesvirus infection
llv05168  Herpes simplex virus 1 infection
llv05169  Epstein-Barr virus infection
llv05170  Human immunodeficiency virus 1 infection
llv05200  Pathways in cancer
llv05203  Viral carcinogenesis
llv05222  Small cell lung cancer
llv05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:llv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    125083298
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    125083298
   04064 NF-kappa B signaling pathway
    125083298
   04668 TNF signaling pathway
    125083298
   04071 Sphingolipid signaling pathway
    125083298
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    125083298
  09143 Cell growth and death
   04210 Apoptosis
    125083298
   04217 Necroptosis
    125083298
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    125083298
   04622 RIG-I-like receptor signaling pathway
    125083298
   04657 IL-17 signaling pathway
    125083298
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    125083298
  09158 Development and regeneration
   04380 Osteoclast differentiation
    125083298
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125083298
   05203 Viral carcinogenesis
    125083298
  09162 Cancer: specific types
   05222 Small cell lung cancer
    125083298
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    125083298
   05160 Hepatitis C
    125083298
   05168 Herpes simplex virus 1 infection
    125083298
   05163 Human cytomegalovirus infection
    125083298
   05167 Kaposi sarcoma-associated herpesvirus infection
    125083298
   05169 Epstein-Barr virus infection
    125083298
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    125083298
   05135 Yersinia infection
    125083298
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    125083298
   05014 Amyotrophic lateral sclerosis
    125083298
   05016 Huntington disease
    125083298
   05017 Spinocerebellar ataxia
    125083298
   05022 Pathways of neurodegeneration - multiple diseases
    125083298
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    125083298
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    125083298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:llv03019]
    125083298
   04121 Ubiquitin system [BR:llv04121]
    125083298
Enzymes [BR:llv01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125083298
Messenger RNA biogenesis [BR:llv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     125083298
Ubiquitin system [BR:llv04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    125083298
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING zf-C3HC4_2 zf-C3HC4_4 zf-RING_5 zf-RING_UBOX zf-RING_6 MATH SlyX
Other DBs
NCBI-GeneID: 125083298
NCBI-ProteinID: XP_047555513
LinkDB
Position
13:94767430..94792373
AA seq 742 aa
MQVPFHWGPEGVGCSCACNLGTRAQDSAVVTCSWRNHCLQEDEGLFGTCFESRICGKFPP
ALPPAWSVHQQDATDVERRGPAGLEKKIREESPADCTRDARNGERTCLHCALESRPVLGV
PFSVHWACPLVERSEDRSLKGLALVSTGRTCHGVTTVSHPWTEGLSPGGACKRQTPQKPS
RVCTGTGLRPHSRWGPGGSGARGLVTRCGLGRARRCAALMAAAGATPPGSLDLLQPGFSK
TLLGTKPEDKYLCSACRNVLRRPFQAQCGHRYCSSCLTSILSSGPQNCAACVHEGIYEEG
VSILESGSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPFTLTECPACKG
LVRLGEKERHSEHECPERSLSCRHCRAPCCWADMKAHHEVCPKFPLTCDGCGKKKISREK
FQDHVRACGKCRAPCRFHVVGCPELVESEKQQQHEAHWLREHLAMLLGGLLEAKPFSGAG
GHFLSQSEVGGWEASTLHPEAGLPKAAELQQRCEALERKTATFENIVCVLNREVERVAMT
AEACGRQHRLDQDRIEALSNKVQQLERSISLKDLAMAELEQKVHEMEATTFDGVFIWKIS
DFARKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPHD
ALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVSDMNIASGCPLFCPVSKME
AKNSYVRDDAIFIKAIVDLTGL
NT seq 2229 nt   +upstreamnt  +downstreamnt
atgcaggtgccatttcattggggacctgaaggagtgggttgtagctgtgcttgtaatttg
gggactagagcacaggactcagcggtggtcacttgttcctggagaaaccattgtctccag
gaagatgaaggccttttcggcacgtgttttgagagtcggatctgtgggaaattcccgccc
gccctcccaccggcgtggtcggtgcaccagcaggacgccacagatgtggagaggcgaggg
ccagcaggtctagagaagaaaatccgggaagagtcacccgcagactgcacgcgtgatgcc
aggaatggggagcgcacctgtcttcactgcgcgctggagtccaggcctgtgcttggggtg
ccgttctccgtgcactgggcctgcccccttgtggagaggagtgaggaccgctctctcaag
ggcctggcccttgtgtccacagggaggacatgtcacggtgtcaccacagtctcccacccc
tggacagagggtctgagcccaggaggggcatgtaagaggcagactccacagaaaccgtca
agggtctgcacaggaacaggcttgaggccgcattcccggtggggacctgggggcagtgga
gcccggggtctcgtgacccgttgtggcttaggaagggcgcggcggtgcgcggctctcatg
gctgcagccggcgcgacccctcccggctccctagacctgctgcagcccggcttctccaag
accctcctggggaccaagccggaggacaagtacctgtgctcggcctgcaggaacgtgctg
cgcaggcctttccaggcacagtgcggccaccgctactgctcctcctgtctgaccagcatc
ctcagctccgggcctcagaactgcgccgcctgcgttcacgagggcatatatgaggaaggc
gtctctattttggaaagcggttcggctttcccagacaacgctgcgcgcagggaggtggag
agcctgccggctgtctgtcccagtgacggctgcacctggaaggggacccttaaagagtat
gagagctgccatgaaggacgctgcccgttcacgttgaccgagtgcccggcgtgcaaaggc
ctggtccgccttggggagaaggagcgtcactcagagcacgagtgcccggagagaagcctc
agctgccggcactgccgggcaccctgctgctgggcggacatgaaggcgcatcacgaagtc
tgtcccaagttccccttgacttgcgacggctgcggcaagaagaagatctcacgggagaaa
ttccaggaccatgtcagggcgtgcggcaagtgccgggccccgtgcaggttccatgtcgtc
ggctgccctgagttggtggagagcgagaagcagcagcaacatgaggcccactggctccgg
gagcacttggccatgctgctgggcggcctcctggaggccaagcccttctctggggcaggg
ggccacttcctgagccagagcgaggtggggggctgggaagccagcacgctgcaccccgag
gcggggctccccaaggctgcagagctgcagcagcggtgcgaggccctggagaggaagacc
gccacctttgagaacatcgtctgcgtcctgaaccgagaggtggagagggtggccatgact
gccgaggcctgtggccggcagcaccggctggaccaggacaggatcgaggccctgagtaac
aaggtacagcagctggagaggagtatcagtctgaaggacctggcgatggcggagctggag
cagaaggtccatgagatggaggcgaccaccttcgacggcgtgttcatctggaagatctct
gacttcgccaggaagcggcaggaggccgtggccggccgcacgcctgccatcttctcccca
gccttctacacgagcaggtacggctacaagatgtgtctgcgcatctacttgaacggagac
ggcaccgggcgcgggacacacctgtcgctcttctttgtggtgatgaagggcccccacgac
gcgctcctgcgctggcccttcaaccagaaggtcaccttaatgctgctcgaccagaacaac
cgggagcacgtgattgatgcctttagacccgatgtgacctcgtcctctttccagaggcca
gtcagtgacatgaacattgccagtggctgcccccttttctgccctgtctccaagatggag
gccaagaactcctacgtgcgcgatgatgccatctttatcaaagccatcgtggacctgacg
gggctctag

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