Lutra lutra (Eurasian river otter): 125083628
Help
Entry
125083628 CDS
T08100
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04064
NF-kappa B signaling pathway
llv04622
RIG-I-like receptor signaling pathway
llv04623
Cytosolic DNA-sensing pathway
llv05160
Hepatitis C
llv05161
Hepatitis B
llv05162
Measles
llv05164
Influenza A
llv05168
Herpes simplex virus 1 infection
llv05169
Epstein-Barr virus infection
llv05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
125083628
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
125083628
04623 Cytosolic DNA-sensing pathway
125083628
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
125083628
05160 Hepatitis C
125083628
05171 Coronavirus disease - COVID-19
125083628
05164 Influenza A
125083628
05162 Measles
125083628
05168 Herpes simplex virus 1 infection
125083628
05169 Epstein-Barr virus infection
125083628
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
llv04054
]
125083628
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125083628
Pattern recognition receptors [BR:
llv04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
125083628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
CCDC85
AAA_22
CBP110
Peptidase_S51
Motif
Other DBs
NCBI-GeneID:
125083628
NCBI-ProteinID:
XP_047556391
LinkDB
All DBs
Position
13:complement(56788294..56847597)
Genome browser
AA seq
1047 aa
AA seq
DB search
MGSQQPPGSPLSREEGEAPPPAPAPEGRRRSRRVRLRGSCRHRPSFLGRRELGTGAPAGT
ASVSSEAASCSFDFQSAAEVSQRLRLSALGLLLRRSAQAGGLQAFEGSAALAREPPAGMS
AEDRRNLHAFRDYVMKTLDPTYILSYMAPWFKDDVVQHIQAEKNNKGTMEAASLFLKFLL
ELQEEGWFRGFLDALGHAGYSGLYEAIETWDFQKIESLEEYRSLLKRLQPEFKTTVNPKD
ILPKISQCLISQECEEVIQVCSNKGLMAGAEKMVECLLRSDKENWPKTLKLALEMEESKF
SELWIVDKDAKNVEPKVLEDDEMETSDIQIFYKEEPECQNLSQNSSPPSAASPTCTPLKP
RNYQLELALPAKEGKNTLICAPTGCGKTLVSLLICEHHLKKFPQGQKGKVVFFAIQLPLY
EQQKSTFSDYFEKLGYKVAGVSGVTAETVSVEQIVENNDIIILTPQILLNSLRNGTIPSL
SVFTLMIFDECHNTGKNHPCNMIMFNYIDQKLGGSSDPLPQVIGLTASVGTGDAKNTKEA
MEYICKLCASLDTEVIATVKDNLEELEEVAYKPQKFFRKVESRTTDRFKCIISQLMRETE
SLAKSIFDELGTVTLENVSQIQNRSFGTQKYEQWIVSVQKACMVFQLPDKDEESRICKAL
YLYTSHLRKYNDALIINEHARMKDALDYLKDFFADVQSAGFDETEQDLTRRFEEKLKELE
SVSMDLTNENPKLKDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELSFLNP
GILTGRGKTNRNTGMTLPAQKCALDTFRTDGDKKILIATSVADEGIDIAECNLVILYEYV
GNVIRMIQTRGRGRARGSKCFLLTSNADVIEKEKINIYKENMMNESILRLQTWNEAVFKE
KILQIQMQEKFIRDSQEKVEPVPDKENKKLLCRKCKGFACYTADIRVLEDCHYAVVGDAF
RKCYVSKLHPKPKTFGHFEKKAKIFCAREDCRHDWGIHVKYKTFEIPVIKIESFVVEDIA
TGAQKLYAKWRDFPFEKIPFDATEMSK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgcagcagccgccggggtctccgctgtctcgcgaggagggtgaagcgcccccg
cctgctcccgctcctgagggccggcggagaagtcgccgggtacgcctccgcggatcctgc
cgtcaccgacccagctttctgggccgccgggagcttggtacgggcgccccagccgggact
gcgtcggtatcctccgaggctgctagttgcagtttcgatttccagtctgcggctgaggtt
tcccagcggctccgcctctcagcactgggtctgcttctcagaagatccgcgcaagccggc
ggtctccaggcctttgaaggtagtgctgccctggcgagggagccacccgccggcatgtcg
gccgaggatcggcggaatctgcacgccttccgggattatgttatgaagactctggaccct
acctatatcctaagctacatggccccctggtttaaggacgatgtagtgcagcatattcag
gctgagaaaaacaataagggcacaatggaggctgcctcactttttcttaagtttctattg
gagctccaggaagaaggctggttccgtggctttttggacgcccttggtcatgcaggttat
tctggactttatgaagccattgaaacttgggatttccaaaaaattgaaagtctagaggag
tacagatcgcttctaaagcgtttacaaccagaatttaaaaccacagttaatccaaaagat
atccttcctaaaatatcccaatgtttaattagtcaggagtgcgaagaagttatacaggtg
tgttccaacaaggggctgatggcaggtgcagagaaaatggttgaatgccttctcagatca
gacaaggaaaactggcccaaaactttgaaacttgctttggagatggaagagagcaagttc
agtgaactgtggattgtagacaaagatgcaaaaaatgttgaaccgaaagttcttgaggat
gatgaaatggaaacttctgacatacagattttctataaggaagaaccagaatgccagaat
cttagtcagaactcatctccaccctcagcagcctctcctacctgcacgcctctgaaacca
agaaattaccaactagagctcgctttgcctgctaaggaaggaaaaaacacattaatatgt
gctcctactggatgtggaaaaacccttgtttcccttcttatatgtgaacatcatcttaaa
aaatttccacaaggacaaaaggggaaagttgtcttttttgctattcaactcccactgtat
gaacagcagaaatccacgttctccgattattttgaaaaacttgggtataaagttgcaggt
gtttctggagtaacagctgagactgtctcggtggaacagattgttgagaacaatgacatc
atcattttaactccacagattcttttgaatagccttagaaatgggaccattccatcactc
tctgtctttactttgatgatatttgatgaatgtcacaacaccggtaaaaaccatccttgc
aatatgatcatgtttaattatatagatcagaaacttggaggatcttcagacccactgcct
caggtcattgggctgactgcctcggttggcactggggatgccaaaaacacaaaggaagcc
atggaatatatctgcaaactgtgtgcctctcttgacacggaggtgatagcaacagtcaaa
gacaacttggaggaactggaagaagttgcttataagccccagaagtttttcaggaaagta
gaatcccggactactgacagatttaaatgcatcatatctcagctgatgagggagacagag
agtctggcaaagagtatctttgacgaactcggtaccgtaactcttgaaaatgtatctcaa
attcaaaataggagttttggaacacagaaatatgagcagtggatcgtttctgttcagaaa
gcgtgcatggtgtttcagttgcccgacaaagatgaagagagcaggatttgtaaagccctg
tatttgtacacttcccacttgcggaaatataacgatgccctcattatcaatgagcatgca
cggatgaaagatgctctggattacttaaaagacttcttcgctgatgtccaaagtgcagga
tttgatgagactgagcaggacctcactcgtagattcgaagaaaaactgaaggaactggaa
agtgtttccatggatctcaccaacgagaaccctaaactaaaagatctctccttcatcttg
caagaagagtaccacttaaacccagagagtagaaccatcctctttgtgaaaaccagagca
cttgtggatgctttgaagaagtggattgaagaaaattctgagctcagctttctaaaccct
ggcatattgactggacgtggcaaaacaaatcggaacacaggcatgacgctcccagcacag
aagtgtgcattggacacatttagaaccgatggagataaaaagattctgattgccacttca
gtggctgatgaaggcatcgacattgctgagtgtaatttggtcatcttgtatgagtatgtg
ggcaatgtcatcagaatgattcaaaccagaggcagaggaagagcaagagggagcaagtgc
ttccttctgaccagcaatgctgatgtaatcgaaaaagaaaaaataaacatatacaaggaa
aacatgatgaatgaatccattttaaggcttcagacgtggaatgaagcagtatttaaagaa
aagattctccagatacagatgcaagaaaaattcatcagggatagtcaagaaaaagtagaa
cctgtacccgataaggagaataaaaaactgctttgcagaaagtgtaagggctttgcatgt
tacacggctgacatcagagtgttagaggactgccattacgctgtggttggagatgctttc
aggaagtgctatgtgagcaaattacaccccaaaccaaagacctttgggcattttgagaag
aaagcaaagatcttctgtgccagagaggactgccgccatgactggggaatccatgtgaag
tataagacatttgagattccagttataaaaatagaaagctttgtggtggaggatattgca
actggagctcagaagctatatgcaaagtggagggattttccttttgagaagatacccttt
gatgctacagaaatgtccaaatga
DBGET
integrated database retrieval system
