Lutra lutra (Eurasian river otter): 125084054
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Entry
125084054 CDS
T08100
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04140
Autophagy - animal
llv05014
Amyotrophic lateral sclerosis
llv05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125084054
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125084054
05022 Pathways of neurodegeneration - multiple diseases
125084054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
llv04131
]
125084054
Membrane trafficking [BR:
llv04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
125084054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
125084054
NCBI-ProteinID:
XP_047557119
LinkDB
All DBs
Position
13:complement(52479488..52506745)
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AA seq
481 aa
AA seq
DB search
MSNLCPPPSPAVAKTEIALSGESPLLAATFAYWDNILGPRVRHIWAPKTEQLLLSDGEIT
FLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTE
LSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIVLEGTERMEDQGQSIIPMLTGEV
IPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTCGCSVVVGSS
AEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMY
APYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIICTDESF
TPDLNIFQDVLHRDTLVKAFLDQVFHLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDT
QKGKKPFKSLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMT
F
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatctctgtccaccaccatctccagctgttgccaagacagagattgctctaagt
ggtgaatcgcctttattagcagctacttttgcttactgggacaatattcttggtcctaga
gttagacacatttgggctccaaagacagaacagctacttctcagcgatggagaaataact
tttcttgccaaccacaccttaaatggagaaatcctccgaaatgcagagagtggggctata
gatgtgaagttttttgtcttgtctgaaaaaggagtaattattgtttcgttaatctttgat
ggaaactggaatggagataggagcacgtacggtctatcaattatacttccacagacagaa
ctcagcttctacctcccacttcacagagtgtgtgttgatagattaacacacattatcagg
aaaggaaggatatggatgcacaaggaaaggcaagaaaatgtgcagaagatagtcttagaa
ggcacggaaagaatggaagatcagggtcagagtattattccaatgcttactggtgaagta
attcctgtaatggaactgctttcatctatgaaatcacacagtgttcctgaagaaatagat
atagctgacacagttctcaatgatgatgatattggtgatagctgtcacgaaggctttctt
ctcaatgccatcagctcacacttgcaaacctgtggctgttctgtcgtcgtaggtagcagt
gcagaaaaagtaaataagatagtgagaacattatgcctttttctgactccagcagagaga
aaatgttccagattatgtgaagcagaatcatcatttaagtacgaatcagggctctttgta
caaggcctgctaaaggattcaactggaagctttgtgctccccttccggcaagtcatgtat
gctccctatcccaccacgcacatagatgtggacgtcaatactgtcaagcagatgccacca
tgtcacgaacatatttataatcagcgtagatacatgaggtctgagctgacagcgttctgg
agagccacttcagaagaagacatggctcaggatactatcatctgtacagatgaaagcttc
actccagatctgaatatttttcaagatgtcttacacagagacaccttagtaaaagccttc
ctggatcaggtttttcatttgaaacctggtttgtcgctcaggagtactttccttgcacag
tttctactcgtccttcacagaaaagccttgacgctaataaaatatatagaagatgatacg
cagaaggggaaaaagccctttaaatctctacggaatctgaagatagaccttgatttaaca
gcagagggcgaccttaacataataatggctctagctgagaaaattaaaccaggtttacac
tcgtttatctttggaagacctttctatactagtgtacaagaacgagatgttctaatgact
ttttaa
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