Lutra lutra (Eurasian river otter): 125086861
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Entry
125086861 CDS
T08100
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125086861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llv03041
]
125086861
Spliceosome [BR:
llv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125086861
Complex C
U5 SnRNP specific factors
125086861
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
Motif
Other DBs
NCBI-GeneID:
125086861
NCBI-ProteinID:
XP_047562383
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All DBs
Position
16:18140856..18182758
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDEDDVGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggataccgacttgtatgatgagtttgggaattatattgggccagagcttgattctgat
gaagatgatgatgaattgggcagagagaccaaagatcttgatgagatggatgacgatgat
gacgaggatgacgtaggagaccatgacgaggaccacccggggatggaggtggtgctgcac
gaggacaagaagtactaccccacggccgaggaggtgtacggccccgaagtggagaccatc
gttcaggaggaagacacccagcctctcaccgaaccaattattaagccggtgaaaaccaag
aaattcactctgatggagcagacattacctgtcacggtgtatgaaatggatttcttggca
gatctgatggataactcagaactcatcagaaatgtcaccctctgtggccatctccaccac
ggcaagacgtgttttgtagattgcttaatagagcagactcacccggaaatcaggaagcgc
tatgaccaagatctgtgctatactgacatcctcttcacagagcaggagagaggtgttggc
atcaaaagcactcccgtgacggtggtcttgccagataccaaaggaaaatcttacctcttc
aatatcatggacactccaggacatgtgaatttttctgatgaggtcacggctggcttgcgt
atctcagatggagttgtcctattcattgatgccgctgaaggcgtgatgctgaacacggag
cggctgatcaagcacgcggtgcaggagaggctggcggtcaccgtgtgcatcaacaagatt
gaccgactgattctggagctgaagctgcctcccactgatgcttattacaagctgcggcac
atcgtggatgaggtcaatggactcataagcatgtattccaccgatgagaacctgatcctt
tccccactcctgggcaacgtctgcttctccagctcccagtacagcatctgctttacgctg
ggctcctttgccaagatctatgctgacaccttcggtgacattaactaccaggaatttgct
aaaagactctggggtgacatttatttcaaccccaaaacacgaaagttcaccaaaaaggcc
ccaaccagcagctcccagaggagctttgtggagtttatcttggagcccctttataagatc
ctcgctcaggtggtgggtgacgtggacaccagcctccccaggactctggacgagcttggc
attcacctgaccaaggaggaactgaagctgaacatccgccccctgctcaggctggtctgc
aaaaagttcttcggcgagttcacaggctttgtggacatgtgtgtgcagcatattccctct
ccaaaggtgggcgccaagcccaagattgagcacacctacaccggtggcgtggattctgat
ctcggcgaggccatgagcgactgtgaccccgacggtcccctgatgtgccacactaccaag
atgtacagcacagatgatggagttcagtttcatgcctttggccgggtgctaagtggcacc
atccacgccgggcagcctgtgaaggtgctgggggagaactacaccctggaggatgaggag
gactcccagatatgcaccgtgggccgcctctggatctctgtggccaggtaccacattgag
gtgaaccgtgttcctgctggcaactgggttctgatcgaaggtgttgatcaaccgattgtg
aagacagcaaccataactgaacctcgaggcaatgaggaggctcagattttccggcccctg
aagttcaacaccacgtctgttatcaagattgctgtggaaccagtcaacccctcagagctg
cccaagatgctggacggtctgcgcaaggtcaacaagagctatccatccctcaccaccaag
gtggaagagtccggggagcatgtgattctgggtactggggagctctacctggactgtgtg
atgcacgacttgcggaagatgtactcagagatcgacatcaaggtggctgaccctgttgtc
acattttgtgagacggtagtggaaacatcttcactcaagtgctttgctgaaacacccaat
aagaagaacaagatcaccatgattgctgagccccttgagaagggcctcgccgaggacata
gagaacgaggtggtccagatcacgtggaacaggaagaaactcggagaattcttccagacc
aagtacgattgggatctgctggctgcacgttccatctgggcttttggccctgatgccacc
ggccccaacatcctggtggatgataccctgccctctgaggtggacaaggctcttcttggc
tcagtgaaggacagtatcgttcaaggtttccagtggggaacccgagaggggcccctctgt
gatgagctgattcgaaatgtcaagtttaagatcctggatgcagtggttgcccaagagccc
ctgcaccggggcgggggtcaaatcatccccacggcgaggagagtcgtctattctgccttc
ctcatggccactcctcgtctgatggagccttactactttgtggaggtccaggcccctgcg
gattgtgtctccgctgtgtacaccgtcctggccaggcgcagggggcatgtgactcaggat
gcacccatcccaggctcccctctctacaccatcaaagctttcatccctgccattgattct
tttggctttgagactgatctgcggactcacacccaagggcaagccttttccttgtctgtc
ttccaccattggcagattgtgcccggtgatcctctggacaagagcattgtcatccgcccc
ctggagccacaacctgctcctcacctggcccgggaattcatgatcaaaacccgtcgcagg
aagggcctgagcgaggacgtaagcatcagcaagttcttcgatgaccccatgttgctggag
ctcgccaagcaggatgttgtgctcaactaccccatgtga
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