Lutra lutra (Eurasian river otter): 125093345
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Entry
125093345 CDS
T08100
Name
(RefSeq) short transient receptor potential channel 3 isoform X1
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04360
Axon guidance
llv05017
Spinocerebellar ataxia
llv05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
125093345
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
125093345
05022 Pathways of neurodegeneration - multiple diseases
125093345
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
llv04040
]
125093345
Ion channels [BR:
llv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125093345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
125093345
NCBI-ProteinID:
XP_047574309
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All DBs
Position
2:complement(120701289..120775099)
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AA seq
936 aa
AA seq
DB search
MSTKVRKCKEQARVTFPAPEEEEEGEDEGSEPQRRRRGWRGVNGGLEPRSAPSPREPHGY
CPPPFSPGLDMSTEGSPSLRRKTVMREKGRRQAVRGPAFMFNDRGTSLTAEEERFLDAAE
YGNIPVVRKMLEESKTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLL
AISKGYVRIVEAILNHPGFAASKRLTLSPCEQELQDDDFYAYDEDGTRFSPDITPIILAA
HCQKYEVVHMLLMKGARIERPHDYFCKCGDCMEKQRHDSFSHSRSRINAYKGLASPAYLS
LSSEDPVLTALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILN
GDLESTEPLELHRHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAI
KCLVVLVVALGLPFLAIGYWIAPCSRLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRF
EGITTLPNITVIDYPKQIFRVKTTQFTWTEMLIMVWVLGMMWSECKELWLEGPREYILQL
WNVLDFGMLSIFIAAFTARFLAFLQATKAQQYVDSYVQESDLSEVTLPPEIQYFTYARDK
WLPSDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVF
LAFMIGMFILYSYYLGAKVNAAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGY
VLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFS
LVPSPKSFVYFIMRIINFSKCRRSRLQKDIEMGMGNSKSRFTKCFAVHLSLMQHCELNLF
TQSNSRVFESHSFNSILNQPTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDIS
SLRYELLEDKSQATEELAVLIHKLSEKLNPSMPRCE
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaggtcaggaagtgcaaggagcaagcgagggtgaccttccccgcgccggag
gaagaggaggagggcgaggacgaaggctcggagcctcagcgccgccggcggggctggagg
ggcgtcaacggggggctggagccgcgctcggcgccctccccgcgggaaccgcacggctac
tgcccgccgcccttctccccggggctggacatgtccacggagggaagcccatccctgagg
cgcaagacagtgatgcgggagaagggccggcgccaggcggtacgaggtccggctttcatg
tttaatgaccggggcacgagccttaccgccgaggaggagcgcttcctggacgctgcggag
tatggcaacatccctgtggtgcgcaagatgctggaggagtccaagacgctgaacgtcaac
tgcgtggactacatgggccagaacgcgctgcagctggcggtcggcaacgagcacctggag
gtgacggagctgctgctcaagaaggagaacctggcgcgaatcggcgacgccctgctgctt
gccatcagcaagggctacgtgcgcatcgtggaagccatcctgaaccaccccggcttcgcg
gctagcaagcgcctgaccctgagtccctgtgagcaggagctccaggacgacgacttctac
gcctacgacgaggacggcacgcgcttctcgcccgacatcacgcccatcatcctggcggcg
cactgccagaagtacgaggtggtacacatgctgctgatgaagggcgccaggatcgagcgg
ccgcacgactatttctgcaagtgcggagactgcatggagaagcagaggcacgactctttc
agccactcacgctcgaggatcaatgcctacaaggggctggcaagccccgcgtacctgtcc
ttgtctagtgaggacccggtgctcaccgccctggagctcagcaacgagctggccaagcta
gccaacatagagaaggagttcaagaatgactatcggaagctctccatgcaatgcaaagac
tttgtggtgggtgtgttggatctttgccgggactcagaagaagtagaagctattctgaat
ggagatcttgaatccacagagcctctagagctacacaggcataaagcttccctgagtcgt
gtcaagcttgctattaagtatgaagtgaaaaagtttgtggctcaccccaattgccagcaa
cagctcttgacaatctggtacgagaacctctcaggcctgcgggaacagaccatagctatc
aagtgtctggttgtgctggttgtggccttgggcctcccatttcttgccattggctactgg
atcgcaccatgcagcaggctggggaaaattctgcgaagcccttttatgaagtttgttgca
catgctgcttctttcatcatcttcctgggcctgcttgtgttcaatgcctcagacagattc
gaaggcatcaccacgctgcccaatatcactgttattgactatcccaagcagatcttcagg
gtgaaaaccacccagttcacgtggacagagatgctaattatggtctgggttctcggaatg
atgtggtctgagtgtaaggagctctggctggaaggacctagggaatatattttgcagttg
tggaatgtgctggacttcgggatgctctccatcttcattgctgctttcacggccagattc
ctagctttccttcaggcaacaaaagcacagcagtatgtggacagttatgtccaagagagt
gacctcagtgaagttacacttccaccggagatccagtatttcacttatgccagagataaa
tggctcccttctgaccctcagatcatatctgaaggcctatatgctatagctgttgtgctc
agcttctctcggattgcatatatccttcctgcaaatgagagctttggccccttgcagatc
tctcttggaaggactgtgaaggatattttcaagttcatggtcctctttattatggtgttt
cttgcctttatgattggcatgttcatactgtattcttactaccttggagctaaagtaaat
gctgcttttaccactgtagaagaaagtttcaagactttgttttggtcgatatttgggttg
tctgaagtcacttccgttgtgctcaaatacgatcacaaattcatagagaatattggatac
gttctttatggaatatacaatgtaactatggtggtcgttttactcaacatgttaattgct
atgattaatagctcatatcaagaaattgaggatgacagtgatgtagaatggaagtttgcc
cgttcaaaactttggttatcttattttgatgatggaaaaacattacctccacctttcagt
ctagttcctagtccgaagtcatttgtttatttcatcatgcggatcattaacttttccaaa
tgcaggaggagccggctacagaaggatatagaaatgggaatgggtaactccaagtccagg
ttcacaaagtgctttgctgtacacttgagcctcatgcaacactgtgagttaaacctcttc
actcagtctaactcaagagtttttgaatcacacagttttaacagcattctcaaccagcca
acacgttatcagcagataatgaaaagacttataaagcgatatgttctgaaagcacaagtg
gacaaagaaaatgatgaagttaatgaaggtgaattaaaagaaatcaagcaagatatctcc
agccttcgttatgaacttttggaggacaagagccaagcaactgaggaattagccgttctg
attcataaactcagtgagaaactgaatcctagcatgccaagatgtgaatga
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