Novilysobacter luteus: LYB30171_01501
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Entry
LYB30171_01501 CDS
T08395
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llz
Novilysobacter luteus
Pathway
llz03030
DNA replication
llz03410
Base excision repair
llz03420
Nucleotide excision repair
llz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LYB30171_01501 (ligA_2)
03410 Base excision repair
LYB30171_01501 (ligA_2)
03420 Nucleotide excision repair
LYB30171_01501 (ligA_2)
03430 Mismatch repair
LYB30171_01501 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llz03032
]
LYB30171_01501 (ligA_2)
03400 DNA repair and recombination proteins [BR:
llz03400
]
LYB30171_01501 (ligA_2)
Enzymes [BR:
llz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LYB30171_01501 (ligA_2)
DNA replication proteins [BR:
llz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LYB30171_01501 (ligA_2)
DNA repair and recombination proteins [BR:
llz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LYB30171_01501 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LYB30171_01501 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
LYB30171_01501 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LYB30171_01501 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
ARM_ECM29_C
DUF7340
Motif
Other DBs
NCBI-ProteinID:
CAG4973675
UniProt:
A0ABN7QYY4
LinkDB
All DBs
Position
1:complement(1612541..1614883)
Genome browser
AA seq
780 aa
AA seq
DB search
MTSNPAARITELRRQLEDANYRYHVLDDPTIPDVEYDRLLRELDALEDAHPELRSPDSPT
QRVGATPSGAFAPVRHAIPMLSLANAFSDDEVADFVRRIEQKLGDEALVFSAEPKLDGLA
ISLRYDGGRFVRGATRGDGATGEDVTANLRTVRAIPLQLRGDGWPQVLEVRGEVYMPLVA
FRAYNEQALANGGKVLANPRNGAAGSLRQLDPRATAQRPLAFYAYAVGAVEGGTLPETHS
ATLHQLREWGLPVSGESVVVQGLDGLLDYYRRIGARRDTLAFDIDGVVYKLDDYASQAEM
GFVSRAPRWAIAHKFPAQEQTTVVESIEVNVGRTGAVTPWVLMQPVHVGGVTVTRATLHN
ADQVARLDVRVGDTVVVRRAGDVIPEVVRVLPDQRRPGAPEWAMPEACPVCGSEIVREEG
AVVWRCSGELTCASQRKEAIGHFASRRAMDIEGLGERFIAALSDLDYVQSVADLYRLTLD
DLLEMKQRADERDGTTPETVKAGKVATRWAENLIEAIDRSRQTTLERFLFALGIQHIGES
TAKALSAWFGDLELIRRLPWPLFKRVPDIGGEVARSIGHFLDQPGNQQVIDDLLARGVTI
TDAHPPSPKLRETLGLATLLVDLEIPKITPLRAEQLASAFPDAARLLGAPEHNLVTAGLP
NDTAATFVAWRGLPANARLLAATGDAVARLDNLLPETADVVAGPLDGQTVVLTGTLSAMT
RDEAKDRLEALGAKAAGSVSKKTSFVVAGEAAGSKLAKAEQLGVDVWDEARLLSFLAEHE
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccaaccccgccgcccgcatcaccgagctgcgccgccagctcgaagacgccaac
taccgctaccacgtcctcgacgaccccacgatcccggatgtcgagtacgaccgcctgctg
cgcgagctcgacgcgctcgaggacgcccatccggagctgcgttcgccggattcgccgacc
cagcgcgtcggcgccacgccgtcgggcgcgttcgcgccggtccgccacgccatcccgatg
ctgtcgctggccaatgccttcagcgacgacgaggtcgccgacttcgtccgccggatcgag
cagaagctgggcgacgaggcactggtgttctcggccgagcccaagctcgatggcctcgcc
atcagcctgcgctacgacggcggccgcttcgtccgcggcgcgacccgcggcgacggcgcg
accggcgaggacgtgactgccaacctgcgcaccgtgcgggcgattccgctgcagttgcgc
ggagacggttggccgcaggtgctcgaggtccgtggcgaggtctacatgccgctggtcgcg
ttccgcgcctacaacgagcaggcgctggccaatggcggcaaggtgctggcgaacccgcgc
aacggcgcggccggctcgttgcgccagctcgacccgcgcgccaccgcgcaacgcccgctc
gcgttctacgcctacgcggtcggcgcggtggagggtggcacgttgccggagacccactcc
gcgaccctccaccagctgcgcgagtggggcctgccggtcagtggcgagagcgtggtcgtg
cagggcctcgacgggctgctcgactactaccggcgcatcggtgcgcggcgcgacacgctc
gcgttcgacatcgacggcgtcgtttacaaacttgacgactatgcgtcccaggccgagatg
gggttcgtctcgcgcgcaccgcgctgggcgatcgcgcacaagttcccggcgcaggagcag
accaccgtcgtcgaatcgatcgaggtcaacgtcggtcgcaccggcgccgtgacgccgtgg
gtcttgatgcagccggtccacgtgggcggcgtcacggtcacccgcgcgacgctccacaac
gccgaccaggtcgcacgcctcgacgtacgcgtgggcgacacggtggtcgtgcgccgcgct
ggcgacgtcattcccgaggtcgtgcgcgtactgcccgaccagcgtcggccgggcgcgccc
gaatgggccatgcccgaagcgtgccctgtctgcggctccgagatcgtgcgcgaggagggc
gcggtggtgtggcgatgctcgggcgagctgacctgcgcgtcgcagcgcaaggaggccatc
ggccatttcgcctcgcgccgggccatggacatcgagggcttgggcgagcgtttcatcgcc
gccctgtcggacctggactacgtgcagtcagtcgccgacctctaccggctcaccctcgac
gacctgctggagatgaagcagcgtgccgacgagcgcgatggcaccactcccgagacggtc
aaggccggcaaggtcgccacccgctgggcggagaacctgatcgaggcgatcgaccgcagc
cgccagaccacgcttgagcggttcctgttcgcgctgggcatccagcacatcggggagagc
actgccaaggccctgtccgcgtggttcggcgacctcgaactgatccgccggctgccgtgg
cccttgttcaagcgcgtacccgacatcggtggcgaggtcgcacgctcgatcggccacttc
cttgaccagcccggcaaccagcaggtcatcgacgacctgttggcacgcggcgtcaccatc
accgatgcccatccgccgtcacccaagctgcgcgaaacgctcggcctggcgacgctgctg
gtggacctggagatcccgaagatcaccccgctgcgggcggaacagctcgcatccgcgttc
cccgacgccgcacggctgctcggcgcacccgagcacaacctggtcaccgcaggactgccc
aacgacaccgcggcgacgttcgtggcgtggcgcgggttgccagccaacgcacggctgctg
gcggccacgggcgacgcagtcgcgcggctcgacaatttgttgccggaaaccgcggacgtg
gtggccggccccctcgacgggcagaccgtcgtgctcaccggcacgctgtcggccatgacc
cgcgacgaggccaaggaccggctggaggcgctcggggccaaggccgccggaagcgtgtcg
aagaagaccagtttcgtggtggccggcgaggcggccgggtccaaactcgccaaggccgag
caactcggcgtagacgtgtgggacgaggcgcggctgctgtcgttcctcgccgagcacgag
tga
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