Leishmania major: LMJF_30_1330
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Entry
LMJF_30_1330 CDS
T01014
Symbol
ABCH3
Name
(RefSeq) putative ATP-binding cassette protein subfamily H,member 3
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lma
Leishmania major
Pathway
lma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMJF_30_1330 (ABCH3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_30_1330 (ABCH3)
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LMJF_30_1330 (ABCH3)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_28
RsgA_GTPase
AAA_29
AAA_16
AAA_24
ATP-synt_ab
Dynamin_N
AAA_23
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
5653663
NCBI-ProteinID:
XP_001684727
UniProt:
Q4Q7H1
LinkDB
All DBs
Position
30:461518..462843
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AA seq
441 aa
AA seq
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MIGAPWPPEAVFGNTVDRVASPAPVPERKISIADQLHLPLSRFVEKMSWGEKRRVQILHG
MLYPATVYLLDECSTDIDVAERRTVLELVRQECEAKDGCCVYATHIFDGIEGWATHLLLM
EGGRVVDFKAVEKLTLPLEDYALQFMSKRAHAARGVDGVAAASLSHGSSAAISTTSPACP
TTAAAACPTSATTDAPVTYWPRGHADEKRSEIVINCAQLNYKDVFKNLSFQVFRGERVLL
CGGNGTGKSTLLNMLGGKQFFDNRQGSLSVLGKRCYDDMLLNALVSYGGDWWTAVPGGEV
HVREMLQLRTSRAERLCEMLAVDMDWDVRHISAGEQKRVQLLLHLLDDKPVVLLDEATTD
LDVYQRHSLLQFLYEESVQRGVTVVYSTHIFGGVEGWANVVVLLDRTVRGVHAVWRASEG
QPIVLQRVVDAIVSLKAREVF
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgattggtgcaccatggccacccgaggcagtgttcggcaacactgtggaccgcgtggcc
tcgccggcgccggtgccagagcgaaagataagtatcgccgaccagctgcacctacccctt
tcccgcttcgtggaaaagatgagctggggcgaaaagagacgggttcagatccttcatggc
atgctctaccccgccaccgtgtacctcctcgacgagtgcagcaccgacatcgacgttgca
gagcggcgcactgtgctggaattggtacggcaggagtgcgaggcgaaggacgggtgctgc
gtgtatgcgacccacatcttcgacggaatcgaaggctgggccacccacctgctgctcatg
gaggggggccgcgtggtggacttcaaggcggtggaaaagctcaccctgcccttggaggac
tacgcgctccagttcatgagcaagcgcgcccacgctgctcgtggcgtcgacggcgtggcg
gcggcgtcgctgtcgcacgggagttctgcggccatttcaacgacgtcgccagcgtgcccg
acgacagctgcagccgcctgcccaacctctgcgacaaccgacgcgccggtcacgtattgg
ccacgagggcacgcggacgagaagcgaagcgaaatcgtcatcaactgtgcgcagctgaac
tataaggatgtctttaagaacttgtcgtttcaggtgttccgcggcgagcgggtgctgctg
tgcggcggtaacggcaccggcaagtccaccttgctgaacatgcttggcggaaagcagttc
tttgacaaccgccagggctctctctccgtgcttggtaagcggtgctacgatgacatgctg
ctgaacgctctcgtcagctacggcggagattggtggactgccgtgcctggtggggaggtg
cacgtgcgcgaaatgctccagctgcggacctctcgtgccgagcgcttgtgtgagatgctg
gccgtggacatggactgggatgtgcgacacatcagcgctggagagcagaagcgtgtgcag
ctgctcttgcacttgttggatgacaagcccgtcgtgctgcttgatgaggcgaccaccgac
ctggacgtttatcagcgccacagcctcctgcagttcctctacgaagagagcgtgcagcgc
ggggtgacagttgtctactcgacgcacattttcggaggcgtagaaggctgggccaacgtc
gtggtactactggaccggaccgtgcgcggcgttcatgcagtgtggcgcgcctctgaaggg
cagcccatcgtactgcagcgcgtcgtcgatgcaatcgtttctctcaaggcgcgagaagtc
ttttga
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