Lysinibacillus macroides: I6G82_22480
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Entry
I6G82_22480 CDS
T08056
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmac
Lysinibacillus macroides
Pathway
lmac03030
DNA replication
lmac03410
Base excision repair
lmac03420
Nucleotide excision repair
lmac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6G82_22480 (ligA)
03410 Base excision repair
I6G82_22480 (ligA)
03420 Nucleotide excision repair
I6G82_22480 (ligA)
03430 Mismatch repair
I6G82_22480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmac03032
]
I6G82_22480 (ligA)
03400 DNA repair and recombination proteins [BR:
lmac03400
]
I6G82_22480 (ligA)
Enzymes [BR:
lmac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6G82_22480 (ligA)
DNA replication proteins [BR:
lmac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6G82_22480 (ligA)
DNA repair and recombination proteins [BR:
lmac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6G82_22480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6G82_22480 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6G82_22480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6G82_22480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
QPR67903
LinkDB
All DBs
Position
4583808..4585811
Genome browser
AA seq
667 aa
AA seq
DB search
MNEIEQRIEELNQLLHEYGHAYYVLDRPVVADSVYDQLMQELIALEEANPSLIYPDSPTQ
RVGGAVVEGFKKVTHDYPMLSLSNAFNEAGLQEFDRKVRQAIGDQFSYVCELKIDGLAIS
LKYENGLFVQGATRGDGVVGEDITANLRTIRAIPLRLKEPITIEVRGEAYMPKRSFEKLN
EQRVENGEELFANPRNAAAGSLRQLDPKIAASRHLSTFIYAIGGDGEAYGIDGHAEMLDY
LESLGFPSNKERQRCSTIEEVMAFIEHWTENRLNLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVITTLLDIHLTVGRTGVVTPTAILAPVQVAGTTVQRASLHNEDLIR
DKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPVESVPYVIQKNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYHLTVEQLVELE
RMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEEFGSMEALMAATEEQL
VVIHEIGDKMASSLVEFFSNEDACAVIGRLAEAGVNMTYKGKKVEAAIGDNPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQLGIDVWNEETL
IEQLSLI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatcgaacaacgtatagaggaattaaatcaattattgcatgagtatggacat
gcctattatgtattagataggcctgttgtagctgatagcgtttatgatcaattaatgcag
gagcttattgcactagaagaagcgaatccatcactgatctaccctgattcacctacacag
cgcgttggtggggcagtggtagagggctttaaaaaagtgacgcatgattaccctatgctt
agcctatcaaatgcttttaatgaagcgggtcttcaagaatttgaccgtaaagttcggcag
gcaattggtgatcaattctcctatgtatgtgagctgaaaatagacggtcttgctatttca
ttaaagtatgaaaatggtttatttgtacaaggggcaacacgaggagatggagttgtagga
gaagatattacagccaatttaaggacgattcgagcgatacctctgcgtttaaaggagccc
atcaccattgaggtacgcggtgaggcatatatgccgaaaaggtcatttgaaaaattaaat
gagcagcgtgtagaaaatggtgaagaactatttgcgaatccccgtaatgctgctgctggc
tccttacgtcagctagaccctaaaattgcggcaagccgtcatttatcaacctttatttat
gcgattggtggcgatggcgaggcatatggcattgatggacatgcggaaatgctcgactat
ttagagagcttaggattcccctccaataaagagcgtcaacgttgttcaacgattgaagag
gtaatggcgtttatcgagcattggacagagaatcgtctaaatttagcttatgaaattgat
ggtattgtaattaaagttgatcgctacgcacagcaggatgagctaggctatacagctaaa
agtccgcgctgggccatcgcttataaattccccgcagaggaggttatcacaacattactt
gatattcatttaacagtagggcgcacaggtgttgtgacgccaacagctatcttagcacca
gtacaagtagcgggaaccactgtccaacgtgcatccttacacaatgaggatttaatccgc
gataaagatattcgccttggagataccgtgattattagaaaagcaggcgatattattcca
caagtcgtaggtgtcttaatagagcagcgtcctgtagaatctgtgccatatgtaatacaa
aaaaactgccctgtatgtgatagtgagcttattcgaattgaaggagaggttgcgctacgc
tgtgtgaatcctgcgtgctttgcacaaattgcagaaagcattaaatactttgtgtcacgt
aatgcgatgaatattgatggtttaggggataaagtagtggagcaattattgcgtgcagat
ttaattcatgatgtatctgatttatatcatttaacagttgagcagcttgttgagctagaa
cgaatgggcgaaaaatctgcaaccaatttagtcaatgctattcaagcctctaaggaaaac
tcgatggagcgattattaattggcctaggcatccgacatgttggagaaaaggcagcaaaa
atcgtatcagaggaatttggttcaatggaggcattgatggcagccacagaggaacagcta
gtggtgattcatgagattggcgataaaatggcctcgtcattagtcgaatttttctcaaat
gaagatgcgtgtgcagtgattggccgtcttgctgaagcaggcgtgaatatgacctataaa
ggtaaaaaagtagaagcggctataggcgataatccttttgcaggtaaaacaattgtgtta
actggtaaacttgagcaattgacacgcaacgaagcaaaggcgaaaatagaagagttaggt
ggtactgtcacaggcagtgttagcaaaaaaacagatcttgtaatcgcaggtgcggatgca
ggttctaagctaacaaaggctgagcaattaggcattgacgtttggaacgaagaaacctta
attgagcaacttagtcttatttaa
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