Secundilactobacillus malefermentans: FGL90_01590
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Entry
FGL90_01590 CDS
T06836
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmae
Secundilactobacillus malefermentans
Pathway
lmae03030
DNA replication
lmae03410
Base excision repair
lmae03420
Nucleotide excision repair
lmae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FGL90_01590 (ligA)
03410 Base excision repair
FGL90_01590 (ligA)
03420 Nucleotide excision repair
FGL90_01590 (ligA)
03430 Mismatch repair
FGL90_01590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmae03032
]
FGL90_01590 (ligA)
03400 DNA repair and recombination proteins [BR:
lmae03400
]
FGL90_01590 (ligA)
Enzymes [BR:
lmae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FGL90_01590 (ligA)
DNA replication proteins [BR:
lmae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FGL90_01590 (ligA)
DNA repair and recombination proteins [BR:
lmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FGL90_01590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FGL90_01590 (ligA)
MMR (mismatch excision repair)
DNA ligase
FGL90_01590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FGL90_01590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
DUF1611
POLH-Rev1_HhH
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QEA30960
LinkDB
All DBs
Position
complement(313503..315518)
Genome browser
AA seq
671 aa
AA seq
DB search
MAGQATESIRQEAETLRKQLQAWGIAYYTEDNPVVEDFTYDKAYQRLVEIETNYPDLITP
DSPTQQVGDEVISDFSKVTHEIPMLSMGDVFSEAELAEFENRITNNVGGKVDYNCELKID
GLAISLRYENGILVQGSTRGNGSIGEDITKNLKTIPSIPTKLKRPLNLDVRGECYMPKES
FAKLNETREANGEAVFANPRNAAAGSLRQLDPKVTASRKLSTFMYNVASFDPLESRTQAE
MLEELHDLGFTINPTYRVANNVADIDAYVDEFQRKRSDLAYGIDGIVIKVNSLQLQRSLG
ATVKVPRWAIAYKFPPEEAETVVRNIEWTVGRTGVVTPTAIMDPVKLAGTVVGRASLHNP
DYLIQKDIRLLDTVLLHKAGDIIPEISEYVADKRAADSTPYEIPTHCPSCGADLVHLDEE
VALRCINPKCPAQLAEGMNHFASRNAMNIDGLGPKIVNQLFEHQFVKDIADLYRLTEDQL
LTLDKFGAKSAAKLLTAIANSRNNSLERLLFGLGIRHVGNKAARLIAEHFKTLDALMQAD
GETIAEINSMGMVIADSITTYFANGQVQQLISELKELEINMTYTSGSEQIIDPSSTFNSK
RVVLTGKLEQMTRPEASEWLTNRGASVTGSVSKSTDLVIAGKDAGSKLKKAQSFNIEVWD
EDRFIEEMDKS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtcaagcaactgaatcaattcgtcaagaagcagaaacgctacggaaacagctt
caagcgtggggaattgcctattacacagaggacaaccctgttgtagaagattttacttat
gataaggcatatcaaagattggttgaaattgaaaccaactatcccgacctgatcacacca
gactcaccaacgcagcaggttggggatgaggttatttctgatttctctaaggtgacgcac
gaaattccaatgctctccatgggagacgttttttctgaagctgaattggctgaatttgaa
aatagaattaccaataatgttgggggaaaagttgactacaattgcgagcttaaaatagat
gggttagcaatttccttacgatatgaaaatggaattttagttcaaggatccacgcgagga
aatggctcaattggtgaggacattaccaagaatcttaaaacgattccgtcaattccaact
aaattaaaaagaccgctgaatctcgatgttcgtggagaatgctacatgcccaaagaatcg
tttgccaaactaaatgaaactcgcgaggctaatggcgaagcggtattcgcaaatccgcgt
aacgctgctgctgggagcttacggcagctcgatcctaaagtaactgcttctcgaaagctc
agtacgtttatgtataatgtggcgtcatttgatccactagaatctcgaactcaggctgaa
atgctagaagaacttcatgatttaggatttacgataaatccgacctatcgggttgccaat
aatgtggctgatatcgacgcctatgttgatgaatttcaacgaaagcgaagcgatttggct
tatggtattgatggcattgttatcaaagtaaattcattacaactgcagcgttctttaggc
gctacggtcaaggtaccacgctgggcaattgcctataagtttcctcctgaagaggccgaa
acagtggttagaaatattgaatggacggttggccgtaccggagttgtcactcccactgca
atcatggatccagtaaagttagcgggaacggttgtgggaagagcgtctttgcataatcca
gattatttaattcaaaaggatattcgattgttagacaccgttttactccataaagccggc
gacatcatcccagaaatttcggagtatgtcgcggataaacgagccgccgacagcacgcca
tatgagattccaactcattgtccctcatgtggtgccgacctcgttcatttagatgaagaa
gtcgctttaagatgtattaatcccaagtgtccggctcaactagctgaggggatgaaccat
tttgcctcacgaaacgccatgaatatcgacgggttaggcccaaagattgtgaaccagctt
tttgagcaccaatttgttaaagatattgcagatttatatcggttgactgaggatcagtta
ttaactttagataaatttggtgcgaaatcggctgctaagctattgacagcaatcgctaat
agtcgcaataattcactcgaacgacttttgtttgggttaggaattcggcatgttggaaat
aaagcggcccgattgattgcggagcactttaaaactttagatgccttaatgcaggctgat
ggagaaacaattgctgaaattaattccatgggcatggttatcgcagatagcattacgacc
tactttgctaatggtcaagttcagcaacttatcagcgaattaaaggaactggaaataaac
atgacttatacaagtggttcggagcaaataattgacccttcaagcacatttaattctaaa
cgggtcgttctaactggcaagcttgaacaaatgacccgaccagaggcaagtgagtggtta
acgaatcgtggtgcctcagtaactgggagtgtttcgaagagtactgatttggtcattgct
ggtaaagatgctggtagtaaattgaagaaggctcaatcctttaacatagaggtttgggac
gaagatcgatttattgaagaaatggacaaaagctga
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integrated database retrieval system
