Liquorilactobacillus mali: LM596_02070
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Entry
LM596_02070 CDS
T06815
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmal
Liquorilactobacillus mali
Pathway
lmal03030
DNA replication
lmal03410
Base excision repair
lmal03420
Nucleotide excision repair
lmal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LM596_02070 (ligA)
03410 Base excision repair
LM596_02070 (ligA)
03420 Nucleotide excision repair
LM596_02070 (ligA)
03430 Mismatch repair
LM596_02070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmal03032
]
LM596_02070 (ligA)
03400 DNA repair and recombination proteins [BR:
lmal03400
]
LM596_02070 (ligA)
Enzymes [BR:
lmal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LM596_02070 (ligA)
DNA replication proteins [BR:
lmal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LM596_02070 (ligA)
DNA repair and recombination proteins [BR:
lmal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LM596_02070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LM596_02070 (ligA)
MMR (mismatch excision repair)
DNA ligase
LM596_02070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LM596_02070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
BCDHK_Adom3
Beta-prop_WDR35_TULP_N
5_3_exonuc
RUBY_RBDX
IFT46_B_C
Motif
Other DBs
NCBI-ProteinID:
QFQ73996
LinkDB
All DBs
Position
451458..453479
Genome browser
AA seq
673 aa
AA seq
DB search
MVAVTRKQAQERISELVKQLNDWAYRYYVEDQPTVEDYVYDKAYRELIELEKSYPELILE
DSPTQRVGGQILSGFEKKEHEIPMLSLGDVFSKNELEQFDQRLSRVLAEKVNYSCELKID
GLAISLIYKDGVFVQGSTRGNGIIGEDITENLKTVKAIPLRLKEPITLEVRGECYMPKKA
FAKLNKKREEQGLAVFANPRNAAAGSLRQLDTKITASRQLSTFIYYLMDPGKFGLKTQTD
VLKQLHEWGFKVNLESRQSKSMKEIFKYIDEYQAKRTDLPYEIDGIVLKADNLVTHAIVG
NTVKVPRWAIAYKFPPDEQETVVRRIEWTVGRTGTVTPTAVMDAVQLAGTTVSRASLHNP
DYLKEKDIRLLDTVKLHKAGDIIPEVSEVVLAKRPADSKIVEIPTKCPVCNAELVHLDEE
VALRCINPKCPALVKESLVHFASRNAMDITGLGPKVVEQLFAKQLINDVADLYHLTFEDL
LKLDNFKDKSASNLLTAIDNSRHNSVERLLFGLGIRHVGAKVAKLLMAHFKSLTGLVAAG
TEEIAQLDSLGQVIATSIVTYFDNTEVKKLVTELADAGVNLEYLGPDIGASVNADNYFNG
KKIVLTGTLDQLKRAEAKEWLEANGADVLGSVSKKTDIVIAGHDAGSKLTKAEKLGIEIM
SEQQFIEQMEVAK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggtagctgttacaaggaaacaggcacaggaacgaatctctgaattagttaaacaatta
aatgactgggcataccgctattatgtagaagatcagccaactgtggaagactatgtttat
gataaggcgtatcgagaacttattgaattggagaagtcatatccagaacttattctagaa
gattctcctacacagcgagtaggcgggcaaattctaagcggattcgaaaaaaaggaacat
gagattccgatgctttctttgggagatgttttttcaaagaatgagttggaacagttcgat
cagcgtctgagtagggtacttgctgaaaaggttaattacagttgtgaacttaaaatcgat
ggcttagcaatttcacttatttataaagatggagtttttgtacaaggttcgactcgaggt
aatggaataattggcgaagatattacggagaatttgaagactgtcaaggcaattccacta
agattgaaagaaccaatcactctagaagttcgtggcgaatgttatatgccgaaaaaggcc
tttgcaaaacttaataaaaaaagagaagagcaaggattggcagtttttgcaaatccaagg
aatgctgcagcgggaagtctacggcagctagatacaaaaatcacagcttcaaggcagctc
agtacctttatttactacctaatggatcctggaaaatttggcttaaaaactcaaacggat
gtgcttaaacaactacatgaatggggttttaaggtcaatttggagtcaagacagtcaaaa
agcatgaaagaaatttttaaatatattgatgaatatcaagcaaaaagaacggatctgcca
tatgagatcgatggaattgtattgaaagcagataatttggtaacacatgcaattgttgga
aatacggtcaaggtaccacgctgggctattgcatataaatttccaccagatgaacaagag
acagttgtacggagaatcgaatggacggttggaagaacaggaaccgtcacgccaactgcg
gtgatggatgcagtacagcttgcgggaacaaccgtttcgagggcttcgttgcataatcct
gattatctgaaggaaaaggatattcgactgttagatacggttaagttacacaaagctgga
gatattattcccgaggtctcagaagtagtactggctaaacgtccggcggattccaaaatt
gtcgagattccaacgaagtgtccagtatgtaatgcagaactagtacatctcgatgaggag
gttgcgctgcgctgtattaatccaaagtgtccagctctagtcaaggaaagtttagtgcat
tttgcatcgcggaacgcaatggatatcacaggattaggccccaaagttgttgagcagctg
tttgcgaagcaattaattaacgatgttgcagatttatatcacctaacttttgaagatttg
cttaaattagataattttaaggataagtctgctagcaatctgttgacagctattgataat
agtcggcataattctgtagagcgacttctttttggattaggtattcgacatgttggtgca
aaagttgcgaagcttctgatggcacactttaagtccttgactggacttgtcgctgcggga
acggaagaaattgcacaattagattcattaggacaggtaatcgcaacgagtattgttact
tattttgataatacagaagttaagaaattggttacagagttggcagatgccggtgtgaat
ttggaatatttagggcctgatataggtgctagtgttaatgcagataattatttcaacgga
aagaaaattgttttgacagggacactagaccaattgaaacgtgctgaggcaaaagagtgg
ctggaggcaaatggtgccgatgttctcggcagtgtgtcaaaaaaaactgacattgtaatt
gctggtcatgacgctggcagcaaattgacaaaggcggagaagctcggaattgaaataatg
agtgagcaacagtttattgagcaaatggaggttgcaaagtga
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