Leisingera methylohalidivorans: METH_10160
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Entry
METH_10160 CDS
T02961
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03030
DNA replication
lmd03410
Base excision repair
lmd03420
Nucleotide excision repair
lmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METH_10160
03410 Base excision repair
METH_10160
03420 Nucleotide excision repair
METH_10160
03430 Mismatch repair
METH_10160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmd03032
]
METH_10160
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_10160
Enzymes [BR:
lmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
METH_10160
DNA replication proteins [BR:
lmd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
METH_10160
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
METH_10160
NER (nucleotide excision repair)
GGR (global genome repair) factors
METH_10160
MMR (mismatch excision repair)
DNA ligase
METH_10160
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
METH_10160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AHD00994
UniProt:
V9VTG3
LinkDB
All DBs
Position
complement(1949425..1951677)
Genome browser
AA seq
750 aa
AA seq
DB search
MAQKTEKDVANLSAEDARAEFLALEEKLRAADLAYHQADAPEISDADYDSLKRRYRALAE
THPDLAAAATQLDAVGAPVASGFGKISHSVRMLSLGNAFANDDVSDFDRSIRKYLGLGRD
AVLAYTAEPKIDGLSLSLRYEQGKLIQAATRGDGSIGENVTANAMTISDIPHQLEGAPEV
LEVRGEVYMSHADFEALNARHAERGGKSFANPRNAAAGSLRQLDAEITRARPLRFFAYSW
GELSKDLAETQMEAIARLHALGFQTNPLTRLCASVEEMIAHYRSIEEQRATLGYDIDGVV
YKVNDLALQGRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTV
GGVVVSNATLHNEDYIQGRDSKGEEIRGGKDIRIGDWVQIYRAGDVIPKVADVDLSKRSA
DAVPYAFPQTCPECASPAVREEGDAVRRCSGGMICPAQSVEKLKHFVSRAAFDIDGLGAK
QVEQFHADGWIKEPADIFDLQKNYGSGLPQLKNREGWGEKSAENLFAAIEEKRTIPLAKL
IFALGIRHAGEVAGRDLALHYQDWQAMADAVDAARPAALAHRAADEAEEAERQAAADAGR
RARISDTRAAAVAARDVPAEAAAAWADLIGVDGIGAVLGLSLSDAFANPEERAAFDRLVA
KLTIVAPDAPAAESPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDILVAG
PGAGSKAKKAAELGIRTMDEDGWLELIAEA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtggcacagaaaacggaaaaagacgtggcaaacctgtcagctgaagacgcgcgggccgag
tttctggcactggaagaaaaactgcgtgcggcggatctggcctatcaccaggccgacgcg
cccgagatcagcgatgcggattatgattcgctgaagcggcgttaccgggcgctggcagag
acgcatccggatctcgcggcggctgccacacagctggatgcggtgggagctccggttgcc
tctggtttcggaaagatctctcattcggtgcggatgctctccttgggcaacgcctttgcc
aacgatgacgtcagcgatttcgaccgcagcatccgcaagtaccttggcttggggcgtgac
gccgtgcttgcctataccgccgagcccaagatcgatgggctgtcgctgtcgctgcgctat
gaacagggcaaactgatccaggccgccacccgcggcgacggcagcatcggtgagaatgta
accgccaatgcaatgaccatctcagacatcccgcaccagcttgaaggggcgccggaggtg
ctggaggtgcgcggcgaagtttatatgagccacgcggatttcgaggcgctcaatgcgcgt
catgcggaacgcggcggcaagagttttgccaacccgcgcaatgccgcagccggatctttg
cggcagctggatgcggaaataacccgggcccggcccttgcgtttcttcgcctatagctgg
ggcgagctgagtaaggatttggcggaaacgcaaatggaggccatagcgcgcctgcacgct
ctgggctttcaaaccaacccgctgacccggctgtgtgcgtcggtggaggagatgatcgcc
cattaccgcagcatcgaggaacagcgcgcgacactgggctatgacatcgatggtgtggtc
tacaaggtcaacgatctggcacttcaggggcggcttgggttccgctccaccacgccccgc
tgggcgatcgcccataagtttccggcagagctcgcctggacccggctggaggcgatcgac
atccaggtcggccgcaccggcgcgctgagcccggttgcccggctcacccctgtgaccgta
ggcggggtggtggtgtcgaacgccaccctgcacaacgaggattacattcagggccgtgat
tcaaagggtgaggaaatccgcggcggcaaggacatccgcatcggtgattgggtgcagatt
taccgggccggtgacgtgatcccgaaagtggcggatgtggatctgtccaagcgctccgcg
gatgcggtgccatatgcgttcccgcaaacctgcccggaatgcgccagcccggcggtgcgc
gaggaaggcgatgccgtgcggcgctgctccggcggcatgatctgtccggcgcaatcggtt
gaaaagctaaagcattttgtatcccgtgcggcctttgacattgatggtctgggtgccaag
caggtagagcagtttcatgccgatggatggattaaagagcctgcggatatctttgattta
caaaagaattacgggtccggactgccgcagctgaaaaaccgtgaaggctggggggaaaag
tctgccgagaacctgtttgccgccatcgaggagaagcgtaccattcccttggccaagctg
atctttgccctgggcatccgccatgctggcgaggttgcaggccgtgatctggcgctgcat
taccaggactggcaggcaatggcggatgcagttgacgccgcacgcccggctgcgctggcg
caccgggcagcggatgaggctgaagaggctgaacgccaggctgccgcggacgcgggccgc
cgtgcccggatatcagacacccgggccgctgctgtcgcggctcgcgatgtcccggctgag
gccgctgccgcttgggcggacctcatcggagtggatggaatcggcgcggtgctgggcctg
tctctgtccgacgcgtttgccaaccctgaggagcgcgcggcttttgaccggctggtggca
aagctgaccatcgttgcgccggatgcaccggctgcagaaagcccggtggcgggcaaaacc
gtggtcttcaccggcacgctggaaaagatgacccgtgccgaagccaaagcgcgggccgag
gcgctgggggccaaggtctccggctcggtgtccaaaaagaccgatattctggtggcgggt
ccgggcgcggggtccaaggccaaaaaagcggctgagctgggcatccggacaatggatgaa
gatggctggctggagctgattgcagaagcatga
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