Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293: LEUM_0568
Help
Entry
LEUM_0568 CDS
T00411
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lme
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Pathway
lme03030
DNA replication
lme03410
Base excision repair
lme03420
Nucleotide excision repair
lme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LEUM_0568
03410 Base excision repair
LEUM_0568
03420 Nucleotide excision repair
LEUM_0568
03430 Mismatch repair
LEUM_0568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lme03032
]
LEUM_0568
03400 DNA repair and recombination proteins [BR:
lme03400
]
LEUM_0568
Enzymes [BR:
lme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LEUM_0568
DNA replication proteins [BR:
lme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LEUM_0568
DNA repair and recombination proteins [BR:
lme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LEUM_0568
NER (nucleotide excision repair)
GGR (global genome repair) factors
LEUM_0568
MMR (mismatch excision repair)
DNA ligase
LEUM_0568
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LEUM_0568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABJ61682
UniProt:
Q03YP0
LinkDB
All DBs
Position
537699..539741
Genome browser
AA seq
680 aa
AA seq
DB search
MLPDFTPIEKLTTQDAQQETARLQKQLVQYGTAYYEDDAPLVEDYIYDALYARLVALEEK
FPQYVIPDSPTQNVGSADTKSELQKVVHPAPMLSLGDVFSLDELNDWDARTTKSLGNQAP
YNLELKIDGLAVALTYVDGQLVQASTRGNGIVGEDVTANVKTIKAIPKKLTEPLTIEVRG
EIYMPKASFAALNKQREADGLEPFANPRNAAAGSLRQLNVKITKSRNLAAFVYYTAEPEM
LGVTTQSGALERFAELGLPTDTHNRVINKMADIADYIDEYTSERESLSYGIDGVVVKVNQ
LDLQFDLGNTVKIPRWAIAYKFPPEEALTIVCDIEWTVGRTGAVTPTAVMDPVLLAGTTV
QRASLHNPDYLREKDIQIGDTVTLHKAGDIIPEIGQVILEKRPTDSETYQVPTICPACES
NLVHIEGEVALRCINPFCSAQIQEGLTHFASRNAMNIDGMGPRVVGQLLKAGYIKDVASI
YRITVEQLLTLDKFQEKSAVKLIDAINSSKENSLERLLFGLGIRMVGAKAARLIAEKFRT
LSAVSEASVEDIANINGIGHTIAQSIVQYFSTPESKQLLVELASSGVNQSYLSDTVIDEN
SFFYGKKVVLTGKLEQSSRPAATKWLQDHGANVAGSVSVKTDLVIAGEAAGSKLDKASQL
GVTVWTEQQFVDEQVKEDGK
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgttaccagattttacgccaattgaaaaattaacaacacaagacgcgcaacaagaaacc
gcgcgattacaaaagcagcttgtgcaatatggcacggcttattatgaagatgacgcgcca
ctagttgaggactacatttacgatgcattatatgcgcggttagttgcgttagaagaaaaa
tttccacaatatgtgattccagattcaccaacacagaatgttggtagcgcagatacaaag
tctgaattacaaaaagtggtacatcctgccccaatgctgtcgttaggggatgtatttagc
ttagacgaacttaacgactgggatgcaagaacaaccaagtcgcttggaaaccaagcacct
tataatttagagttaaaaattgatggcttagcagttgcattgacctacgttgacgggcaa
ctagtacaagcttctacgcgtggaaatggtatcgttggtgaagatgttacagcgaatgtg
aaaacaattaaagcaataccaaaaaaactgactgaaccattaaccattgaggtacgtggc
gaaatttatatgccaaaagctagttttgctgctctaaataagcagcgagaggctgatggt
ttagaaccttttgctaatcctcgtaatgctgcagccggttccttacgtcaattgaacgtt
aaaattactaagtcacgaaacctagcggcttttgtatactatacggctgaacctgaaatg
ctaggagtgacaactcaaagtggtgcgttagaacgatttgcagaattaggtttgccaaca
gacacacacaatcgtgtcatcaataaaatggccgatattgctgactatattgatgagtat
acttcggagcgcgaaagcttgtcttatggtattgatggtgttgttgttaaagtgaatcaa
ctagatttacagtttgatttagggaatacagttaaaatcccacgttgggctatcgcttat
aaatttcctccggaagaagctttgacaatcgtttgtgacattgaatggactgttggacga
actggggcggtaacacctactgcagttatggaccccgttttgctagcgggtacaactgtg
caacgtgctagtttgcataatcctgattatttaagggaaaaggatattcaaattggtgat
acggttacgctacacaaagcgggtgatatcattccagaaatcgggcaagtcattttagaa
aaacgtccgacagatagtgaaacttatcaggttccgacaatatgtcctgcctgtgaatca
aatttagttcacattgaaggtgaagtagcactccgctgtattaatccattctgttcagct
caaattcaagaaggactaacacattttgcgtcaagaaatgcaatgaatattgatggcatg
ggaccaagagttgtcggtcaactactaaaggcaggctatattaaagatgtggcgtccatt
taccgcataacggttgaacaattactaactttagacaagttccaagagaaatcagctgtg
aagttaattgatgcaattaacagttcaaaggaaaattctcttgaacgcttattatttggc
ttagggattcgcatggttggtgcaaaagcggctcgactgatagcagaaaagttcaggacc
ttatcagctgtttcagaagcctctgttgaagacatcgcaaatattaatggtattggtcac
acgattgcccagtcaattgttcaatactttagtacgccagaatctaagcaactacttgtc
gaactagcttcttccggtgttaaccaatcatatttatctgatacagtgattgacgaaaat
tcatttttctatggcaaaaaggtagtcttaactggtaaactagaacagagtagtcgacct
gctgcaacaaaatggttgcaagatcatggggctaacgtcgccggatcagtgtcagtgaaa
acagacttagttattgcaggagaagctgcaggtagcaaacttgataaagctagtcaatta
ggtgttacagtttggaccgaacaacagtttgttgatgaacaagtaaaagaggacggaaaa
taa
DBGET
integrated database retrieval system
