Leptotrichia mesophila: AB8B23_05780
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Entry
AB8B23_05780 CDS
T10902
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmes Leptotrichia mesophila
Pathway
lmes03030
DNA replication
lmes03410
Base excision repair
lmes03420
Nucleotide excision repair
lmes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB8B23_05780 (ligA)
03410 Base excision repair
AB8B23_05780 (ligA)
03420 Nucleotide excision repair
AB8B23_05780 (ligA)
03430 Mismatch repair
AB8B23_05780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmes03032
]
AB8B23_05780 (ligA)
03400 DNA repair and recombination proteins [BR:
lmes03400
]
AB8B23_05780 (ligA)
Enzymes [BR:
lmes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB8B23_05780 (ligA)
DNA replication proteins [BR:
lmes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB8B23_05780 (ligA)
DNA repair and recombination proteins [BR:
lmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB8B23_05780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB8B23_05780 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB8B23_05780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB8B23_05780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
HHH
BRCT_2
MCM_OB
Motif
Other DBs
NCBI-ProteinID:
XDU65665
UniProt:
A0AB39VD75
LinkDB
All DBs
Position
complement(1129849..1131957)
Genome browser
AA seq
702 aa
AA seq
DB search
MNLFNQEKNNENENIDNEKNMSFSDVQEKYTKLRNEIEYHNNLYYNEDKPLISDMEYDAL
MRKLQQLEQEYPELLKNEENGESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIED
FDKRIKKIILSENVKNHSQELEYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTE
NIMEIKTIPKKLKKNVSLEVRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQL
DKTIVAERGLDCYLYYLVNAENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSIE
KWHNDRKKLDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQV
GRTGVITPVAELEAVNLSGSVVKRASLHNFDEIRRKDIKIGDNVIVEKAAEIIPQVVNVV
FDDRTGQEIEIQEPTNCPVCNSELAHEEGLVALKCHNPLCPEKVKRQIAYFVSRDAMNIS
GLGDKIVEKFIELGKIKTIVDIYSLEKYRKELENLEKMGQKSVDNLINSIESSKNRDFSK
VLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDENNW
KIITDLQNIGLQFAIDETNSEEIPDNPIKDKNFLATGKLQKYNRNDIKDIILSKGGNYLS
AVSKNLDFLIAGEKAGSKLEKAEKLGVRVLTEDEFEKEFLEI
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttatttaatcaagaaaaaaataacgaaaatgaaaatatagataatgaaaaaaat
atgagtttttctgatgttcaggaaaaatatacaaaattgagaaatgaaatcgaatatcat
aacaatctttattataacgaggataagcctcttatttcggatatggaatacgacgcttta
atgcgtaaattacaacagcttgagcaggaatatccagaattgctgaaaaatgaggaaaat
ggagaaagttcccctactgaaaagattgggggtactgcaagcgaaaaattttcaaaggta
cgacatcgggtgcctatgcttagtctgtcgaatacttataatatttctgaaattgaggat
tttgacaaaagaatcaaaaaaattattttatctgaaaatgttaagaatcattcacaggaa
ctagagtatattctggaactgaaactggatgggcttagtataagcttgatttatgaaaat
ggagtgcttgttcaggctgtaacacggggagatgggcaagttggggaagatgtgactgaa
aatattatggaaattaaaactattcctaaaaaattgaaaaaaaatgtttcactggaagtt
cgtggagaaattattttgccaatttcgagctttaaccgaataaatcaagaacgggaagat
gatggagaagatgttttcgcaaatcctagaaatgcagcttcagggacaataagacagctt
gataagacaattgttgcagaacgtgggcttgactgttatctctattatcttgtaaatgct
gaaaattacgggataaatactcatttagaaagtattgaatatattgaaaaacttgggttt
aaaacaacaaaaatatttgagaaatatactgattttaaagaattggaaaaatctatcgaa
aaatggcataacgacaggaaaaaacttgattatgaaacagatgggcttgttataaaggta
aataattttgcactttacgaaacgcttggctacacaactaaaagcccacgatgggcaatt
gcctacaagtttcctgctgaacaagtaaaaactaaattaatggacgtaacttttcaagtt
ggaagaactggtgtaatcactcctgttgctgaacttgaagctgtaaatttatcgggttct
gttgtgaaaagagcaagtttacataactttgatgaaattcgcagaaaagatataaaaatt
ggcgataatgtcattgtagaaaaggcggccgaaattattccgcaagttgtaaatgttgtg
tttgacgataggactggacaagaaattgaaattcaggagccaacaaattgtcccgtctgc
aatagcgagcttgcacacgaagaaggacttgtcgccttaaaatgccacaatccactttgc
cccgaaaaagttaaacgccaaattgcctatttcgtttctcgtgatgcaatgaatatttct
ggacttggtgacaaaattgtcgaaaaatttattgaattaggaaaaataaaaacaatagtc
gatatttattcgttggaaaaataccgtaaagaattggaaaatctggaaaaaatgggacaa
aaaagtgtagataacttaataaatagcattgagtccagtaaaaatcgtgatttttcaaaa
gttctctacgcacttggaattccttttgttggaaaattcaatgcgaaccttttaacaaaa
acttttaaaaatattgaaaatctgaaaaatcagtcaatcgaaaatttactggctgtaaaa
ggtattggcgataaagtggcagttgctgtaaatacttttttaaatgatgaaaataattgg
aaaattatcacggatctacaaaatatcggattacaatttgccattgatgaaactaattca
gaagaaatacctgataatccaataaaagacaaaaacttccttgcaactggaaaactgcaa
aagtacaaccgaaacgacataaaagatattatcctgtccaaaggtggaaactatctgtca
gcagtctcaaaaaatctggattttctaatcgctggagaaaaggctggaagtaaactggaa
aaagctgaaaaattaggcgttcgggtacttacagaagatgaatttgaaaaggaatttttg
gaaatttaa
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