Listeria monocytogenes HCC23 (serotype 4a): LMHCC_0806
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Entry
LMHCC_0806 CDS
T00801
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmh
Listeria monocytogenes HCC23 (serotype 4a)
Pathway
lmh03030
DNA replication
lmh03410
Base excision repair
lmh03420
Nucleotide excision repair
lmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMHCC_0806 (ligA)
03410 Base excision repair
LMHCC_0806 (ligA)
03420 Nucleotide excision repair
LMHCC_0806 (ligA)
03430 Mismatch repair
LMHCC_0806 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmh03032
]
LMHCC_0806 (ligA)
03400 DNA repair and recombination proteins [BR:
lmh03400
]
LMHCC_0806 (ligA)
Enzymes [BR:
lmh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMHCC_0806 (ligA)
DNA replication proteins [BR:
lmh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMHCC_0806 (ligA)
DNA repair and recombination proteins [BR:
lmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMHCC_0806 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMHCC_0806 (ligA)
MMR (mismatch excision repair)
DNA ligase
LMHCC_0806 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMHCC_0806 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
ACK39158
UniProt:
B8DFG5
LinkDB
All DBs
Position
815414..817429
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKR
VGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLE
TLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYDIDGIVLKLNNLEQQRQMGTTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCDSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAIHFDTMDNLKVADKETLTS
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLNE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaaaggtatgaggaactaatcaacatacttgatcagtacagctatgat
tattatgtaattgataatccaacagtagaagatgccgaatacgatcagaagatgcaagaa
ctacttaaaatagaagaagcgcatcccgagtgggttacacctgaatctccgtcaaaacga
gttggcggagaagttttagaaggttttaaaaaagtagcacatgacacaccgatgttaagt
cttgccaacgcttttaaccaagaagacttggcagactttgaccgccgaattcgcgacaaa
gtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatctctt
caatacgaaaatggtaaatataaacaaggtgctactcgtggtgatggaaccattggggaa
gacattactgctaacttgcgtacaattcgctccatcccaatgaaacttcaaaaggactat
tccattgaagttcgcggtgaggctttcatgccaaaacgctccttccaaaaactaaatgaa
attcgtgaagaagaaggccagatgttatttgccaatccacgaaatgctgcggctggctcg
cttcgacaattggacacaaaaattgcagcgtcgagaaatcttgatatcttcctttatgca
gtagcagattttggcgaaatgggcgttgaaactcatagcgccggcttagatatgcttgaa
acacttggtcttaaagtcaataaagaacgccgactttgcaacagtttagaagaagtttat
gcgtacattgaagaatggacagaaaaacgcgccggcttagcatacgatattgacggcatt
gttttaaaattaaacaacctagagcaacaacgccaaatggggaccaccgttaaatcgcct
cgttggtcgattgcttataaattcccagccgaagaagtaccaactaagttactcgatatc
gaattaaatgttggtagaacaggtgtgataactcccaccgccgtgttagaaccagtgaga
gtggcaggaacaaccgttagccgcgcttcgcttcataacgaagatttaattacggaaaaa
gacatccgcattggcgacaccgttttaatcaaaaaagctggcgatatcattccagaagtc
attaaaagcatcaccgaagaacgtagcggaagtgaagaacccttccatatgccgaaaaat
tgtccaacgtgcgacagtgaattggttcgtttagaggaagaagtggcgttgagatgtatt
aatcctaaatgcccagctcaaataaaagaaggacttatccactttgtttccaggaatgcg
atgaacattgatggcctcggcgaaaaagtgattatccagctgttttcacagcatttaatt
aaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaagaatg
ggtgagaaatcagtaactaatttactggcatccatcgaagcaagtaaacaaaattcgctt
gaaaaattacttttcggcttaggcattcgccatgttggtgcaaaagccgccaaatcactt
gccattcatttcgatacaatggataatttgaaagtagcagacaaggaaacactgacaagt
attaacgacattggtgaaaaaatggcagacagtattgtgacctattttgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacagggcca
aaactagaagatatgtctgaggaagaacttgttttcgcaggtaaaaccgttgtcttaact
gggaaattagaaaagttaacgcggaatgatgcaaaagcattaatcgaatccctcggagga
aatgtttctggaagcgtcagtaagaaaacggatgttgttgtagctggcagtgatgctggt
tctaaactagccaaagctgaagaactagccattcctatttggtcagaagaagacttaata
gagtacttaccagacgaaggtggattaaacgaatga
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