Leishmania mexicana: LMXM_29_1330
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Entry
LMXM_29_1330 CDS
T02288
Name
(RefSeq) putative ABC transporter
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lmi
Leishmania mexicana
Pathway
lmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMXM_29_1330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_29_1330
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LMXM_29_1330
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_16
AAA_28
RsgA_GTPase
AAA_29
AAA_24
ATP-synt_ab
VapE-like_dom
AAA_23
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
13451578
NCBI-ProteinID:
XP_003877284
UniProt:
E9B0R2
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All DBs
Position
29:451921..453246
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AA seq
441 aa
AA seq
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MIGAPWPPEAVFGNTVDRVASPAPVPERKTRIADALHLRLSRFVDKMSWGEKRRVQILHG
MLYPATVYLLDECSTDIDVAERHTVLELVRQECEAKDGCCVYATHILDGIEGWATHLLLM
EGGRVVDFKAVEKLTMPLEDYALQLMGKRAHAARGVDAVAAPSLSHRSSAAISTTSSACP
TTCAAASPTSATADTPVTYWPQGKTGEEQSEVVINCAHLNYKDVFENLSFQVFRGERVLL
CGGNGTGKSTLLNMLGGKQFFDNRHGSLSVLGKRCYDDMLLNALVSYGGDWWTAVPGGEV
HVREMLQLCTSRAERLREMLAVDMDWDVRHISAGEQKRVQLLLHLLDDKPVVLLDEATTD
LDVYQRHSLLQFLYEESVQRGVTVVYSTHIFGGLEGWANVVVLLDRTVRGAHAVWRASEA
QPISLQRVVDTIVALKSREVF
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgattggtgctccatggccacccgaggcggtgttcggtaacactgtggaccgcgtggcc
tcgccggcgccggtaccagagcgcaagacgcgcatcgccgatgcgctgcacctgcgcctc
tcccgcttcgtggacaagatgagctggggagaaaagagacgggttcagatacttcatggc
atgctctaccccgccaccgtgtacctcctcgacgagtgcagcaccgacatcgacgttgca
gagcggcacactgtgctggaactggtacggcaggagtgcgaggcgaaggatgggtgctgc
gtgtatgcgacccacatcctcgacggtatcgaaggctgggctacccacctgcttctcatg
gagggaggccgcgtagtggacttcaaggcggtggaaaaactcaccatgcccttggaggac
tacgcgctccagctcatgggcaagcgcgcccacgccgctcgcggcgtcgacgccgtggcg
gcgccgtcgctgtcgcaccggagttctgcggcgatttcaacgacgtcttcagcgtgccca
acgacatgtgcagccgcctccccaacctccgcgacagccgacacgccggtcacgtactgg
ccacaagggaaaacgggcgaggaacagagcgaagtcgtcatcaactgtgcgcacctgaac
tataaggatgtttttgagaacttgtcgtttcaggtgttccgcggcgagcgggtgctgctg
tgcggcggtaacggcaccggcaagtccaccttgctgaacatgcttggcggaaagcagttc
tttgacaaccgccacggctctctctccgtgcttggtaagcggtgctacgatgacatgctg
ctgaacgctcttgttagctatggtggcgattggtggactgccgtgcctggtggggaggtg
cacgtgcgcgaaatgctccagctttgcacctctcgtgccgagcgcttgcgtgagatgctg
gccgtggacatggactgggatgtgcggcacatcagcgctggagagcagaagcgtgtgcag
ctgctcttgcacttgctggatgacaagcccgtcgtgctgcttgatgaggcgaccacggac
ctggacgtttatcagcgccacagcctcctgcagttcctctacgaagagagcgtgcagcgc
ggggtgacagtcgtctactcgacgcacattttcggaggtctggagggctgggccaacgtt
gtggtactactggaccggaccgtgcgcggcgctcatgcggtgtggcgcgcctctgaagcg
cagcccatctcactgcagcgcgttgtcgatacaatcgttgctctcaagtcgcgagaggtc
ttttga
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