Labrus mixtus (cuckoo wrasse): 132959481
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Entry
132959481 CDS
T10666
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
132959481 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmix03400
]
132959481 (lig4)
Enzymes [BR:
lmix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
132959481 (lig4)
DNA repair and recombination proteins [BR:
lmix03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
132959481 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
132959481
NCBI-ProteinID:
XP_060888496
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All DBs
Position
24:complement(159308..165261)
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AA seq
911 aa
AA seq
DB search
MEGPSTSDTGNQPSVAARVPFIHLCNTLEKIQKSKTRPEKSKILGDFIESWRKFHVALHK
EKPRTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSVKEVNDFLDSVAVNNASKKKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDANDLYNVNTDLNKVCQQLHNPSVSL
SDVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFFIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLQGSLTPYIHNNFKSNVVNCILDGEMMAYNPTTETFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNDQKLGKETLKKRLETLQTVFTPVKGRIHLVPKTDGRTMQEVV
NALNDAIDAREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPEVFHTLCRIGSGYTMKELYNLGLKLAKNWKVYRKNDPP
ASILCGTEKPEVYIEPCNSVIVQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRGKASGKLASRHLRIDNDEPQKKKRKMPAKPKKEVGIVDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKAELERGIARCGGIVVQNPGRDTYCVIAGVENMRVKNLISSD
QHDLVRAAWLLECLHHKEFIPWQPGHMIHMSPSTREHFAKEYDHYGDSYFVAADERQLRE
VFGRMSGAESSSAGVNVGQVEQRYGWEDLPTSLFRPFEVYMDRYADIGDPKTALPASCLD
IRAMEFRFHGGKVLQKLEEGVSHVIIAEETRLLDLRTLRRCFRKKFKIVQDSWVTDSITA
GYLMNDSDYSV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaccttcaacaagcgatacagggaaccagccctcagtcgcggctcgggttccc
tttatccacctctgcaacactttagagaaaatccagaagtctaaaactcgtccggagaaa
tccaaaatccttggggatttcattgagtcatggaggaagtttcacgtcgctctccacaag
gaaaagcccagaaccacagactctttctacccagccatgcgcctcatagtcccccccttt
gaaagagagcgcatggcgtatggcatcaaagagagcatgctagctaaactctacatcgat
gtgttaggcctcccaaagaatggaccagaagccaataaacttttgaactaccgtgcgccc
actacctcccagggagaagcgggagactttgccggcatggcgtactttgtgctgaagaaa
cgctgcaccagccaagggaacctcagcgtcaaagaagtcaacgactttttagactcggtg
gctgtcaacaacgctagcaagaagaaggatcttgtaaaaaagagtctgctgcaccttatc
acccagagttcggctcttgagcaaaagtggctcatccggatgatcctgaaggacatgaag
cttggaatcagcaaagagaccgtcctccaagtcttccatccggacgccaatgacctctac
aatgtcaacacagacttgaacaaggtttgccaacagctccacaacccctctgtgtctcta
agcgacgtctccatcggactcttctccgctttcaagcccatgttggcagccgttgccaac
atccgcaatgtcgagaaacagatgggaaacagtccctttttcatccaaaccaagctggac
ggcgagcgcatacagctgcacaaagacggggacgtgtacaagtacttcagtcggaacgcc
ttcgagtacacgcagcagtttggggggtcccccttgcagggctctttgacgccttacatc
cacaacaacttcaaaagcaacgtcgtaaactgcatcctggatggggagatgatggcgtac
aacccgacgactgagaccttcatgcagaaagggagcaaattcgacatcaagaggctcatg
gaggactccgagttacagacgtgcttctgcgttttcgatgtgttgttggtgaacgaccaa
aagctcggcaaagagacgcttaagaaacgcctggagaccctgcagacggtcttcaccccg
gtcaaggggaggatacacctcgtcccaaagacggatggcagaaccatgcaggaagtggtg
aacgcgctcaatgacgcgatcgacgccagggaagaaggcatcatggtgaaggatcctttg
tccatctataaaccggacaagcgaggggagggatggctgaagataaagccggaatacgtg
gacggcttgatggacgagctggacctgctgatcgttggcggctactgggggaaaggaagg
cgaggcggcatgatgtctcatttcttatgcgctgtcgcggaagctccaaagcccggtgag
aaacctgaagttttccacaccctctgccgaatcggttcgggctacaccatgaaggagctg
tacaacctcggtttgaagctcgccaaaaactggaaagtctaccgcaagaacgacccgccg
gcttccatcttgtgcggaaccgagaaaccggaggtctacatcgagccctgcaactcggtc
atcgtccaggtcaaggccgcggagatagtggggagcgacatgtacaaaaccaactgcacc
ttgcgtttcccgaggatcgagaagatccgggacgacaaggagtggcaccagtgcatgact
ctcgccgagctggatcagttccgcggtaaggcgtccgggaaactcgcctcgaggcacctt
cgcatcgacaacgacgaaccgcagaagaagaagcgcaagatgcccgccaaacccaagaaa
gaggttgggatcgttgaccactttaagccccaggatctctccggggtaaccaaggagacc
gatatgtttgaggatgttgagttctgtattctgaatgggactgaagatcaccccaaggcc
gagctggaaagggggatagccaggtgtggaggtattgtggttcaaaacccgggacgggac
acctactgcgtgatcgccggggtggagaacatgcgcgtgaagaacctgatttcctccgac
cagcacgacttggtgcgggccgcctggctgctggagtgcctccaccacaaagagttcatc
ccgtggcagcctggtcacatgatccacatgtcgccctccaccagggagcactttgccaaa
gagtacgaccactacggagacagctactttgtggcggcggacgagcggcagctgcgggag
gtgtttggccgaatgagcggcgccgaatcatcatcggcgggagtgaacgtgggccaggtg
gagcagcggtacggttgggaggaccttccaaccagcttgttcagaccctttgaggtttac
atggaccgctacgccgacataggagaccccaaaaccgccttacccgcttcatgtttggac
atcagggcgatggagttccgcttccacggggggaaggtgttgcagaagcttgaggaagga
gtctctcacgttatcatcgcagaggaaaccagacttctggatttgagaactttgagacgc
tgcttcaggaagaagtttaagatagtgcaagactcatgggtgacggattcgatcacagcg
gggtatctgatgaacgactctgactactcagtttga
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