Labrus mixtus (cuckoo wrasse): 132973981
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Entry
132973981 CDS
T10666
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
132973981 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lmix03000
]
132973981 (kdm2ba)
04121 Ubiquitin system [BR:
lmix04121
]
132973981 (kdm2ba)
03036 Chromosome and associated proteins [BR:
lmix03036
]
132973981 (kdm2ba)
Enzymes [BR:
lmix01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
132973981 (kdm2ba)
Transcription factors [BR:
lmix03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
132973981 (kdm2ba)
Ubiquitin system [BR:
lmix04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132973981 (kdm2ba)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
132973981 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
132973981 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
132973981
NCBI-ProteinID:
XP_060893706
LinkDB
All DBs
Position
5:10390334..10400241
Genome browser
AA seq
777 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPPKMGTTSTVKLPSNRSSSGARRRRTRCRKCEAC
LRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEEEED
KFNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKQKRGPGFKY
ASNLPGSLLREQKPVKEEGDVSAAAKRRPDREETPRFRPEESLHRQPPLLSPCNLLRPRP
EDKLRKKRKLFDDDDEEDLGVRKKERPDEPYFSKFLHQIKKEEDDEEAYEENERGRESHF
RSSVERRARFGDPGEEGDEKDLRNEFLNPCIKTPVGDSDQSLCSSPQAGPSSEGGSETQE
KGPRPKARRKRRLPNRELSRELSKALNQEIQKTEDCLANENRQPLKVEPESENEEPKRLF
RNGSDLGDQRSHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPAPPHSPPKCVQME
RHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKIFGHLTHQELCVCMRVCKTWNRWCCDK
RLWMKIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKLSGC
SWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVEDLR
LAGLDITDTSLRLICRQMPFLSSLDLSYCNHINDQSVNLLTAAGTTTRDSLTDINLSVCN
RVTDHSLNFFKRCGSICQIDLRFCKQVSKTACERFIAEMSVSVPFRLKEEKLLEKSS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgatgaggaatatgattcagagtctgagcagcagcgg
gcagccaaccggccaaagcccccaaagatggggacaacgtcaacggttaagctgccatcc
aaccggagctcctcaggagcgagacgcaggaggacacgctgcagaaagtgtgaggcgtgt
ctccggaccgagtgtggcgagtgtcacttctgcaaagacatgaaaaagtttggaggcccg
ggacgcatgaagcagtcgtgcattatgaggcaatgcatcgcgcctgttctgccccacacg
gcggtgtgcgttgtgtgtaaagaggcggggaaagaggacacactggaggaagaggaggac
aagttcaacttcatgctgatggagtgctccatctgcaacgagatcgtccatccaaactgt
ctcaaggtgagcgacgcctcaggagtggtgaacgacgagctcccaaactgctgggaatgt
cctaaatgcaaccacgctggcaagagtggaaaacaaaaaaggggtccggggttcaagtac
gcctccaacctccccggctctctgctgagggaacagaagcccgtgaaggaggagggggac
gtctctgctgcagccaagaggagaccagacagagaggagacgcccaggttcagaccagag
gagtctctccatcgacagccgcctctgctgtccccctgcaacctgctgcggcccaggccg
gaggacaaactgaggaagaagaggaagctgtttgacgacgatgatgaggaagatctgggt
gtgaggaagaaggaaagaccagatgagccttatttttccaaattcctgcaccaaatcaag
aaagaagaggatgatgaagaggcatatgaggagaatgaaagaggaagggagtctcacttc
aggagtagtgtagaaaggagagcgcgttttggagaccctggagaagaaggggatgaaaaa
gatttaaggaatgaattcttgaatccctgcattaaaacacctgtcggagacagcgaccag
tctctctgcagctctcctcaggccggccccagcagcgagggtgggagcgagacccaggaa
aaaggcccgcgtccaaaagcccgccgtaagcggcgtttacctaacagagagctgagccga
gagctgagcaaagcactgaaccaggagatccagaagacagaggactgcctggccaacgag
aaccgccaacccctcaaggtggagccggagtctgaaaacgaggaacccaagaggttgttt
cgcaacggcagcgacctcggggatcagaggtcccacctcaagaccaaagagatgaatggc
acgccctgggagcttcgtcacttctacccgagtcagatcactccgctgggcttcaacaga
agcaccccgaccaaccggccagcacccccacactctccaccgaaatgtgttcaaatggag
cggcacgttatcaggccccctccaatcagcccgccacccgacagactgccactaaaagat
ggaaaaacacatgtcatacagcgtgaggtgtggatgaagatctttggccaccttacacac
caggagctgtgtgtctgcatgagagtttgcaagacttggaatagatggtgttgtgataag
agactttggatgaagatcgatctgaaccgctgcacatccatcacaccactcatgctaagt
gggattatacgccgacagccggtttccttggacctcagttggacaaacatttccaagaag
caattaagctggcttattaatagattaccaggtctgcgagtgttaaagctatctggctgt
tcttgggctgctgtatctgcgctctgcacctccagctgtcccctgctgcgcaccttggac
gtgcagtgggtggagggactcaaagatgcacagatgagagacctcctctccccccccaca
gacaacagaccaggtcagctagataaccgctgcaagttgaggaacgtggaggacctgcgg
ctggcggggctggacatcactgacacatctctacgcctcatctgtcggcagatgcctttt
ctgtcaagtctggacctgagctactgcaaccacatcaacgaccagtcagttaacctgctg
accgcagccgggaccacaactagagactcgctcacagacatcaacctgtcagtgtgtaac
agggtcacggaccattccctaaacttttttaagcgctgtgggagcatctgtcagatcgac
ctccgcttctgtaagcaggtgtcaaagacggcctgcgagaggttcatcgcagagatgtct
gtcagcgtgccgttcagactgaaagaggaaaaactgctagagaagtccagctag
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