Labrus mixtus (cuckoo wrasse): 132994346
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Entry
132994346 CDS
T10666
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lmix Labrus mixtus (cuckoo wrasse)
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lmix03036
]
132994346 (smchd1)
03400 DNA repair and recombination proteins [BR:
lmix03400
]
132994346 (smchd1)
Chromosome and associated proteins [BR:
lmix03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
132994346 (smchd1)
DNA repair and recombination proteins [BR:
lmix03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
132994346 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_6th
Ig_SMCHD1_4th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
Cytochrom_B559a
RNA_pol_L_2
Motif
Other DBs
NCBI-GeneID:
132994346
NCBI-ProteinID:
XP_060920639
LinkDB
All DBs
Position
19:17843723..17873617
Genome browser
AA seq
1976 aa
AA seq
DB search
MLNRRSDLRLSPGSVSSTLEEGVRRRICVYDCRNDREVKSESLEATGVDFNEFLQDLQKT
FSIDPHETFVLAATDRTVLDFNKFEELQDGSTLHLLKQEDQALPAATQERIDFTPHYNTL
IESGKHEYSTCEGKKPFSYALAELIDNALSATVKNDGARSIEIRMLLDETLGKPAVIVLD
NGCGMSPEDLNDWAKYRLCKFKRKKTTAGEAYVRPDPVPRSLNSDISYFGVGGKHSVFYI
GESARMISKKRGSPDVHELTLSKEDFQNKEKNKEDVFSTVITNRRPGDSSHVTKDDERFL
KALIREERTRESFTAVIITEVQPEHIDFMKDKFKVLTRQLAHIYHYYIHGLNGNSMRSSS
SNQDNSPMVDIQVTLREKPPRLPSVMNLREVEDDMQSLYINSATDTFEFRASTQDNSGKV
EGIIRYHPFLYDRETYPQDPDANEDSEDNEVSNDDESGVAHQARPKRSIFDFFWNGRLIP
KTGSFEFDWCTPKGSKVPAECYSRFSGALFTNDAFKVTTNKLSFVDLELTLKNKDIIFTR
VENGKNRRKVDIRRDFTDWLQTCHNKHDKQIKFVDYKETITREDMPKKMQQPWETFSSIE
WDGRIYKTGQLVKSLKTRSNLYGTILRFLLYGKTEKTNGSVFATGGQVELVLEPKALHDK
NKIISISKIDKTATEEAILKHIESDSAKLPDKLRVEWPEGNPWKQNTGYPAGTQLGPLKV
EILDKNGVSMARMPKGEQGPGKTLVIQLKIVREDSDDDVTFVARYSLKWAFWFKKNAGLT
VLGKYTLTLSSMIQENNKTVIGDKELPSYKLSFSITEGIAQKFVIGASMSPTIHVGVPFD
IPLQIKDAYDHSTRPPPDLKPVLKCSELELSFEKTDTRGSTFTIKGVRARGKVQDYQQIK
TYDLNVTLPGLKEDTQMIKISPLPGKPHSLHVKPEDEPVTVENGDTVKFNVEVHDEAGNI
TAYPKQIVQCKVDGLPFKAIDCSSTGAGQLETEPINLKIIHGEPQMLKAEFQIPNKKNIA
TVVRELKVVPSRRVLRMELGSVDDENLVLKNYEKIEWLAGSSLENLFFKLFDEAGREVSL
SPEIASKIKVTWTADENLEDLLQGRLPDLQVPTQAHREQRYQVSYQDQSVSFSFYITPHP
DEPSKMKVTLPTKNPVKLGETMSGITLELLDQYDNVTPTLTPTCVDHMKVEAEGLDQSAI
NFVFEESSSSVLVTGVRFQSGSLGARELCFTYMSFEVRVIVKMTNGDPAKLELVSGPEMP
LQLFNDNGIATPFVIQLYDEWGNPCPDQRVSVELRSSPPALKVMSPVASMPVNAKGTVSF
TVNRVSGPKGYYQLEFMGFFNKKPIPGPSVNLIVIPDPHKPVRLSVQYDTAAKFTAGGKF
TAFAVTVESEDGSQMTTFNPAAASMLLWKGASSGGIPPQTATELKCSKPMENENKDCFHF
RDKDIPQPIGEYTIQFSLRLGREKVLYSPEMKIKVEANQPVKLGPKAQPTPPVVSYSKDI
SSRTLVQNLTLFVMDSYGNPAGQNLNGEVLVSIRDSQNAERRRNLPRFDGKASRCVISLV
DGKAHIDRLTIMENSPGYNGNSYTLLFEPDVQSVPLTPFTLPFHFFNDAENQRKMSELSK
KTVDLNKAIDVYKTIFTKYDTLLPMLNDQWLDTCKKEAEQRKKLINSRVISAQHVTLQSI
GRLIVEKNKEVERIFNTPRRVYPHRDQFKELPDVLGMVGHLAFISDDSEARVISWHLRGD
MRCVVTKTREAAQRIYHNTQGQQEVLPLTSVYVAQVNGPLPHLRNGRLLFEPRGNPVFAR
DLLKYPSDQHHQSCATVFKNFLANTILIDDLDSGNHYREMVVQGGSQCPTILTRQGDRIS
GRGKFGGSQNSAPSNLPDVFGAPLPQEYFTLKEQIELLRQYWIVVQKRDKAEKDFQDQSN
KQKSPEVLKQKQDMDEKIKELDEINRQIESSRLGPVKRPGAGEPSGIHTKRGKPAS
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatcggaggagcgacctgcggctctcaccggggtccgtctccagcacgctggag
gagggagtccgcagacggatttgtgtttacgactgccgcaacgacagagaggtcaagtcg
gaaagtctggaggcaaccggcgtggacttcaacgaatttctccaagatttgcaaaagaca
ttttcaatcgatccacatgaaacatttgtgttggctgcgacggacagaacagtcttggat
tttaacaaatttgaggagctgcaggatggcagcaccctgcatttgttgaagcaggaggat
caggctctgccagcagcgacacaggagcgcatcgacttcacgcctcattataacactttg
attgagagcggcaagcacgagtacagcacttgtgagggcaagaagccattctcgtatgca
ctcgctgagctgattgacaacgcgctttcagccactgttaaaaacgatggtgctaggtca
atagagatacgaatgctcttagatgaaactctggggaaacctgcagtcattgttttagat
aacgggtgtgggatgtcccccgaggacctcaacgactgggcaaagtacagactctgtaaa
ttcaaaaggaaaaaaaccactgcaggtgaagcctatgtccggcctgatcctgtccctcga
agtctcaacagtgacatatcctacttcggtgttggagggaaacattctgttttctacatc
ggggaatcagccaggatgatcagtaaaaaaagaggctcccccgacgtgcatgagctgact
ctgtcaaaagaagactttcagaataaagaaaagaataaagaagatgtcttcagcacggtc
atcacaaacagaaggcctggtgactcttcacatgtgacaaaagatgacgagcgcttcctc
aaggcgctcatccgtgaggaaaggacgagggaaagcttcacagctgtgattatcacggaa
gtccaacctgagcacatagactttatgaaagataaatttaaagttttgaccagacagcta
gctcatatttatcactattacatccacggactcaacggaaactccatgagaagcagctct
tcaaaccaggataattctccaatggtggacattcaggtcactctgcgggaaaagcccccc
agattacccagtgtgatgaaccttagggaggtggaggacgacatgcagagtctgtacata
aatagtgccacagacacgtttgagtttagggcctccactcaagacaacagtggcaaagtg
gagggaatcattcgatatcatcccttcctctacgaccgggaaacctaccctcaagacccc
gacgctaatgaagactccgaggataacgaggtcagcaatgacgacgagtctggagtcgcg
caccaggcaagaccgaaaaggtcgatatttgactttttctggaatggacgactcatacca
aaaactggatcctttgagtttgattggtgcactcccaagggaagtaaggtgccagcagag
tgttacagtcggttttcaggggcgcttttcaccaacgacgccttcaaggtcaccacaaac
aagctgtccttcgtggacctggagctgactctgaaaaacaaggatattatcttcacccgt
gttgaaaatggaaagaatcgcagaaaagtcgacattcgaagggactttacagattggctt
cagacctgtcacaacaagcacgacaaacaaatcaagtttgttgactacaaggagaccata
acaagagaagacatgccaaagaagatgcagcaaccctgggagacgttttcctccatcgaa
tgggacgggagaatctacaagacaggccaacttgtgaagtctctgaaaacaaggtccaat
ctgtatggtaccatacttcgttttttgctgtacggtaaaacagaaaaaacgaatggaagc
gtctttgctacaggaggacaggttgaactggttctggaaccaaaagcacttcacgataag
aacaagatcatctccatttccaagatagacaagacagccaccgaagaagccatcttgaaa
cacattgaaagtgactctgccaagcttccagataaactcagagtggagtggcctgaaggt
aatccctggaagcagaatacaggatacccagcagggacccagttaggaccactcaaagtt
gaaattctcgacaagaacggagtgtcgatggccaggatgccaaaaggggaacaaggacct
ggaaaaaccctggttatccagctcaaaatagtccgcgaagacagtgacgatgacgtgact
ttcgttgcccgttattctctaaaatgggctttctggttcaagaaaaatgcgggtctgact
gtgctggggaagtatactctgactctgtcctctatgatacaggagaacaataagacggtt
atcggagacaaagagcttccaagctacaaactcagtttcagtatcacagagggaattgct
cagaaatttgtcatcggtgcatcaatgagtcccaccattcatgtgggagtgccgttcgac
attcctctgcagataaaagatgcttatgaccactcaacccgtccccctcctgatctcaaa
cctgttctcaaatgcagtgagctggaactgagttttgaaaaaacagacacccgagggtcc
acgttcaccatcaaaggtgtcagagccagaggaaaagttcaagattaccaacagataaag
acatacgacctcaacgtgaccctgcctggcctgaaagaagacacacagatgatcaagatc
agtcctcttcccggcaagccgcattctctccatgtgaaaccagaagacgagccggtcaca
gtagagaacggagacaccgtcaagtttaatgtagaagttcacgatgaggcaggaaacatc
actgcttacccaaaacagatcgttcaatgtaaggttgatgggcttccattcaaggcaata
gactgcagcagcacaggagctgggcagcttgagactgagcccataaatctgaaaataatc
catggagaaccacagatgctcaaggctgagtttcagatacctaataagaagaacattgcg
acggtggtgagggagctgaaggtggtccccagcagaagagtcttgaggatggagctcggc
agtgtggacgatgagaatctggtgctaaagaactatgaaaagatcgagtggttggctgga
agctcgttggagaacctgttcttcaagctgtttgatgaagcgggtagagaggtatctctc
tctccagaaatagcctcaaagatcaaggttacctggactgcagatgaaaatctggaagat
ctgctccaggggaggctgcccgacttacaggtgcccacacaggcacatagagagcaacgc
taccaggtgtcctaccaagaccagagtgtgtccttctctttttacatcacacctcaccct
gatgaaccatcaaagatgaaagtgactctgccaacaaaaaacccagtgaagctgggggaa
accatgtctggaatcaccttggagcttctggaccagtatgataatgttaccccaacacta
acccccacctgtgtggaccacatgaaggtggaagcagagggtctggaccaatcggccatt
aactttgtatttgaggagagcagcagctcagtgctcgtgacaggggtgaggtttcagtct
gggtctctgggcgccagagagctttgcttcacctacatgagctttgaggtgcgagtcata
gttaagatgacaaatggagaccctgcaaagctggaactagtcagtgggccagaaatgcct
ttgcagttgttcaatgataatggcatcgctacacccttcgtcattcaactgtatgacgag
tgggggaacccctgtccggaccagagggtttctgtagagctgaggtcttcacccccggca
ctcaaggtgatgtcacctgttgcatcaatgcctgtgaacgccaaagggacagtgtctttc
actgtgaacagggtgagcggaccaaaggggtactatcagctggagtttatgggcttcttc
aacaaaaaacccatccctggtccatcagtaaaccttatcgtcatccctgatccccacaag
cctgtcaggctgtcagtgcagtatgatacagctgcaaagtttactgctgggggaaaattc
acagcttttgctgtgaccgtggagtctgaggatggaagccaaatgacgacttttaacccc
gctgctgcgtccatgctgctgtggaaaggggcgtcatcaggagggatacctcctcaaacg
gccaccgagctgaagtgtagtaagcccatggagaatgaaaacaaagactgctttcacttc
agagataaagacataccacaacctatcggagagtacaccattcagttttctctgcgtctg
gggagagaaaaagtcctgtacagccctgagatgaagataaaagtggaggccaatcagccc
gtcaaactggggcccaaggctcagccaacacccccggtagtttcctacagtaaagacatc
tccagccggaccttggtgcagaatctgactctctttgtaatggattcatatggaaaccca
gcggggcagaacctgaatggagaagtgcttgtttctataagggactcgcagaatgcagaa
agacgcagaaacctcccgcggtttgatggcaaagctagccgctgtgtgatcagcttggtg
gatggaaaagcccacattgataggctgactatcatggagaacagtccgggatacaacggc
aattcatacacgctcctctttgagcctgatgtgcagtcggttcccctgactcccttcacg
ctccccttccatttttttaatgatgctgagaaccaaagaaagatgtctgagctgtccaag
aagacagttgatctcaataaagcaatcgatgtatataaaacaatctttacaaaatatgac
actctccttcctatgttgaacgatcaatggctggatacatgtaaaaaagaggccgagcag
agaaagaagctgatcaacagccgagtgatatcagcacaacatgttaccttgcaaagtatt
ggcagactgattgtagaaaaaaacaaagaagtggagaggatcttcaacacgcccagaaga
gtctacccccaccgggatcagttcaaggagctgccggatgttttgggaatggttggtcac
ctggcttttataagtgacgactcagaagcgagggtcatctcctggcacctcagaggcgac
atgagatgtgtcgttactaaaaccagggaagcagcacagaggatctatcataacacccaa
ggacagcaggaggtcttgcccctcaccagtgtatacgtggcacaagtcaacgggccgctg
ccacacttaagaaacggccgtcttctctttgagccccgtgggaacccagtgttcgccaga
gatctcctcaagtaccctagtgaccaacaccatcagagctgtgcgactgtgtttaaaaac
ttcctcgcaaatactattctgatcgatgacctggactctggaaaccactacagagagatg
gtggtgcagggtgggtcacaatgtcccaccatcctgaccaggcagggggacaggataagt
ggtaggggcaagtttggaggctcacagaacagtgccccctcgaacttgccagacgttttt
ggagcccccctcccacaggagtatttcactcttaaggaacaaatagagctcctccgtcag
tattggatagttgtgcagaagagggataaagccgaaaaggattttcaagaccaatcaaac
aaacagaagtcccctgaggtgctgaaacagaaacaagacatggacgagaaaatcaaagaa
cttgacgagatcaacagacaaattgagtcttcacgattaggaccggtgaaacgtcctggt
gctggtgagccatcggggattcatacaaagagaggaaagccagcctcatag
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