Listeria monocytogenes SLCC5850 (serotype 1/2a): LMOSLCC5850_1820
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Entry
LMOSLCC5850_1820 CDS
T02223
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmoc
Listeria monocytogenes SLCC5850 (serotype 1/2a)
Pathway
lmoc03030
DNA replication
lmoc03410
Base excision repair
lmoc03420
Nucleotide excision repair
lmoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMOSLCC5850_1820 (ligA)
03410 Base excision repair
LMOSLCC5850_1820 (ligA)
03420 Nucleotide excision repair
LMOSLCC5850_1820 (ligA)
03430 Mismatch repair
LMOSLCC5850_1820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmoc03032
]
LMOSLCC5850_1820 (ligA)
03400 DNA repair and recombination proteins [BR:
lmoc03400
]
LMOSLCC5850_1820 (ligA)
Enzymes [BR:
lmoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMOSLCC5850_1820 (ligA)
DNA replication proteins [BR:
lmoc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMOSLCC5850_1820 (ligA)
DNA repair and recombination proteins [BR:
lmoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMOSLCC5850_1820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMOSLCC5850_1820 (ligA)
MMR (mismatch excision repair)
DNA ligase
LMOSLCC5850_1820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMOSLCC5850_1820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
RNA_pol_A_CTD
DUF7201
Motif
Other DBs
NCBI-ProteinID:
CBY52289
LinkDB
All DBs
Position
complement(1827669..1829684)
Genome browser
AA seq
671 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSKR
VGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDMLE
TLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMGTTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCDSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKAIIQLFSQHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLKVADKETLTN
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLNE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaacggtatgaagaactaatcaacatacttgatcaatacagctatgat
tattatgtaattgataatccaacagtagaagatgccgaatatgatcagaagatgcaagaa
ttacttaaaatagaagaagcgcatcccgagtgggttacacctgagtcaccgtcgaaacga
gttggcggagaagttttagaaggtttcaaaaaagtagcacatgacaccccaatgttaagt
cttgccaacgcttttaaccatgaagatttggcggattttgaccgccgaattcgcgacaaa
gtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatccctt
caatacgaaaatggtaaatacaaacaaggtgctacccgcggtgatggaaccattggagaa
gacattaccgctaacttgcgcacgattcgttccattccgatgaaacttcaaaaggattat
tccattgaagttcgtggtgaagctttcatgccgaaacgctctttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgttatttgctaatccgcgaaatgctgcggctggatca
cttcgacaattagacacaaaaattgcagcgtcaagaaatctcgatatcttcttgtatgca
gtagctgatttcggtgaaatgggcgttgaaacacatagcgccggtttagatatgcttgaa
acacttggtcttaaagtcaataaagagcgccggctttgcagtagtttagaagaagtatat
gcttacattgacgaatggacagaaaaacgcgccgacttagcatatgatattgatggcatt
gttctaaaattaaacaacttagaacaacaacgccaaatgggaaccaccgttaaatcacct
cgttggtcgattgcttataaatttccagccgaagaagtaccaactaagttacttgacatt
gaattaaatgtaggtagaacaggtgtaataactcccaccgccgtgttagaaccagtgaga
gtggcagggacaaccgttagccgtgcttcccttcataatgaagatttaattacggaaaaa
gatatccgcattggcgacactgttttaatcaaaaaagctggcgatatcattccagaagtt
attaaaagcatcaccgaagaacgtagcggaagtgaagaaccattccatatgccaaaaaat
tgtccgacatgcgacagtgaactggttcgtttggaagaagaagtggcgctaagatgcatt
aatcctaagtgcccagctcaaataaaagaaggtcttatccactttgtttccaggaatgcg
atgaatattgacggacttggtgaaaaagcaattatccagttgttttcacagcatttaatt
aaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaagaatg
ggtgagaaatcagtaactaatttactggcatccatcgaagcaagtaaacaaaactcgctt
gaaaaactactttttggcttaggaattcgccatgttggtgctaaagctgccaaatcactt
gccgttcatttcgaaacaatggataatttaaaagttgcggacaaagaaacactgacgaat
attaacgacattggtgaaaaaatggcagacagtattgtgacctattttgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacagggcca
aaactagaagatatgtccgaggaagaacttgttttcgcaggtaaaaccgttgtcttaact
gggaaactagagaagttaacacgaaatgatgcaaaagcactaatcgaatccctcggagga
aatgtttctggaagcgtcagtaagaaaacggatgttgttgtagctggcagtgatgctggt
tctaaactagccaaagctgaagaactagccattcctatttggtcagaagaagacttaata
gagtacttaccagacgaaggtggattaaacgaatga
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