Listeria monocytogenes R479a (serotype 1/2a): LMR479A_1863
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Entry
LMR479A_1863 CDS
T03180
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmr
Listeria monocytogenes R479a (serotype 1/2a)
Pathway
lmr03030
DNA replication
lmr03410
Base excision repair
lmr03420
Nucleotide excision repair
lmr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMR479A_1863 (ligA)
03410 Base excision repair
LMR479A_1863 (ligA)
03420 Nucleotide excision repair
LMR479A_1863 (ligA)
03430 Mismatch repair
LMR479A_1863 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmr03032
]
LMR479A_1863 (ligA)
03400 DNA repair and recombination proteins [BR:
lmr03400
]
LMR479A_1863 (ligA)
Enzymes [BR:
lmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LMR479A_1863 (ligA)
DNA replication proteins [BR:
lmr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LMR479A_1863 (ligA)
DNA repair and recombination proteins [BR:
lmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LMR479A_1863 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMR479A_1863 (ligA)
MMR (mismatch excision repair)
DNA ligase
LMR479A_1863 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LMR479A_1863 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
LdmS_N
BRCT_2
RNA_pol_A_CTD
DUF7201
Motif
Other DBs
NCBI-ProteinID:
CDM17082
LinkDB
All DBs
Position
complement(1836198..1838216)
Genome browser
AA seq
672 aa
AA seq
DB search
MMADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPESPSK
RVGGEVLEGFKKVAHDTPMLSLANAFNHEDLADFDRRIRDKVGDDIAYMCELKIDGLAVS
LQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLN
EIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVETHSAGLDML
ETLGLKVNKERRLCSSLEEVYAYIDEWTEKRADLAYDIDGIVLKLNNLEQQRQMGTTVKS
PRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITE
KDIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCDSELVRLEEEVALRC
INPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSQHLIKDVADLFFLSKEKLLELER
MGEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLKVADKETLT
SINDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVL
TGKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDL
IEYLPDEGGLNE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgataaaaaacggtatgaagaactaatcaacatacttgatcaatacagctat
gattattatgtaattgataatccaacagtagaagatgccgaatatgatcagaagatgcaa
gaattacttaaaatagaagaagcgcatcccgagtgggttacacctgagtcaccgtcgaaa
cgagttggcggagaagttttagaaggtttcaaaaaagtagcacatgacaccccaatgtta
agtcttgccaacgcttttaaccatgaagatttggcggattttgaccgccgaattcgcgac
aaagtgggcgatgatattgcttatatgtgcgaacttaaaattgacggactagcagtatcc
cttcaatacgaaaatggtaaatacaaacaaggtgctacccgcggtgatggaaccattgga
gaagacattaccgctaacttgcgcacgattcgttccattccgatgaaacttcaaaaggat
tattccattgaagttcgcggtgaagctttcatgccgaaacgctccttccaaaaactaaat
gaaattcgcgaagaagaaggccagatgttatttgctaatccgcgaaatgctgcggctggc
tcgctccgacaattagacacaaaaatcgcggcgtcgagaaatctcgatatcttcctgtat
gcagtagctgatttcggtgaaatgggcgttgaaacacatagcgccggtttagatatgctt
gaaacacttggtcttaaagtcaataaagagcgccggctttgcagtagtttagaagaagta
tatgcttacattgacgaatggacagaaaaacgcgccgacttagcatatgatattgatggc
attgttctaaaattaaacaacttagaacaacaacgccaaatgggaaccaccgttaaatca
cctcgttggtcgattgcttataaatttccagccgaagaagtaccaactaagttactcgac
attgaattaaatgtaggtagaacaggtgtaataactcccaccgccgtgttagaaccagtg
agagtggcagggacaaccgttagccgtgcttcccttcataatgaagatttaattacggaa
aaagatatccgcattggcgacactgttttaatcaaaaaagctggcgatatcattccagaa
gttattaaaagcatcaccgaagaacgtagcggaagtgaagaaccattccatatgccaaaa
aattgtccgacatgcgacagtgaactggttcgtttggaagaagaagtggcgctaagatgc
attaatcctaagtgcccagctcaaataaaagaaggtcttatccactttgtttccaggaat
gcaatgaatattgacggacttggcgaaaaagtaattattcagttgttttcacagcattta
attaaagatgtagcagatttgtttttcctttcgaaggagaaactgttagaattagaaaga
atgggtgagaaatcagtaactaatttactggcatccatcgaagcaagtaaacaaaactcg
cttgaaaaactactttttggcttaggaattcgccatgttggtgctaaagctgccaaatca
cttgccgttcatttcgaaacaatggataatttaaaagttgcggacaaagaaacactgacg
agtattaacgacattggtgaaaaaatggcagacagtattgtgacctattttgcgaatgaa
gaagtacatgatttattagaagaactaaaaagggctggcgtcaatatgacctatacaggg
ccaaaactagaagatatgtccgaggaagaacttgttttcgcaggtaaaaccgttgtctta
actgggaaactagagaagttaacacgaaatgatgcaaaagcactaatcgaatccctcgga
gggaatgtttctgggagcgtcagtaagaaaacagatgttgttgtagctggcagtgatgct
ggttctaaactagccaaagctgaagaactagccattcctatttggtcagaagaagactta
atagagtacttaccagacgaaggtggattaaacgaatga
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