Limosilactobacillus mucosae: LBLM1_01705
Help
Entry
LBLM1_01705 CDS
T03814
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmu
Limosilactobacillus mucosae
Pathway
lmu03030
DNA replication
lmu03410
Base excision repair
lmu03420
Nucleotide excision repair
lmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBLM1_01705 (ligA)
03410 Base excision repair
LBLM1_01705 (ligA)
03420 Nucleotide excision repair
LBLM1_01705 (ligA)
03430 Mismatch repair
LBLM1_01705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmu03032
]
LBLM1_01705 (ligA)
03400 DNA repair and recombination proteins [BR:
lmu03400
]
LBLM1_01705 (ligA)
Enzymes [BR:
lmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LBLM1_01705 (ligA)
DNA replication proteins [BR:
lmu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LBLM1_01705 (ligA)
DNA repair and recombination proteins [BR:
lmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LBLM1_01705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBLM1_01705 (ligA)
MMR (mismatch excision repair)
DNA ligase
LBLM1_01705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LBLM1_01705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Nlig-Ia
Hydrolase_6
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AJT49936
UniProt:
A0A0D4CJ70
LinkDB
All DBs
Position
343872..345917
Genome browser
AA seq
681 aa
AA seq
DB search
MTEQKSVNDLTLKEATAEIGPLKAQLLQWGKEYYEQDAPTVEDYVYDRNYQRLVDIENRF
PELITPDSPTQKVGGAAETVLTKVEHAIPMLSMGDVFSVAELMDFNARQQDNPNFTGTTE
YNLELKIDGLSLSLVYENGRLVQGSTRGNGMIGEDVTENVKTIKSIPQKLAEPLSLEFRG
ECFMPKAAFAKLNEEREANGLPTFANPRNAAAGSLRQLDAKVTAKRELDTFMYYIPEYEK
LGVKTQAQALDKMRQLGFHVNEFNRVVHNEAEIKAYIDEYTAKRDDLPYGIDGIVEKVND
LAVEEALGATVKVPRWEIAYKFPPEEQATVVRDIEWTVGRTGNVTPTAVMDPVQLAGTTV
SRASLHNPDYLKDKDIRLGDTVLLHKAGDIIPEISRVILNKRPVDSQPYEIPTLCPVCQS
KLVHLDDEVALRCINPMCPAQVKEGLVHFASRNAMNIDHLGPRVIEQLWDRHLVHDVADL
YRLTYDQLLTLDKFGPKSANNLLTSIANSRNNSVERLLFGLGIRHVGAKAARILAQHFGS
LAAIIAADEESIAEINTIGPTIADSLKNYFANEQVQELIQELQAAGVNLEYHGPAPIAQD
SAAAKEWQGKRVVLTGKLNEMTRDQAKQWLEERGASVTGSVSKKTDLVIAGEKAGSKLTK
AQDLGVEVWNESRFAQAMKED
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaaaatcagtcaatgacttgacgcttaaagaagccacggcagaaatcggt
ccgttgaaagcccagctgctgcagtggggcaaggaatattatgaacaggatgcgcctacc
gttgaggactatgtttatgaccgtaattatcagcggctggttgacattgagaatcgtttc
cctgaactgatcacgcctgattcgccaacgcaaaaagtcgggggcgcagcggaaaccgtc
ttgaccaaagtcgaacatgccattccaatgctttcgatgggggatgtcttttccgtcgcc
gaattaatggactttaatgctcgccagcaggataaccctaattttaccgggacgacagaa
tataatctggaactgaagattgacggcctttctttgtcactggtttatgaaaatggtcgt
ctcgtgcagggttcaacacggggtaacgggatgattggcgaggacgtcaccgaaaacgtc
aaaaccatcaaatcgattccgcaaaagcttgccgagcccttgtcactggaatttcgtggt
gagtgcttcatgcccaaagccgcgtttgctaaattaaacgaggaacgcgaagccaatgga
ctgccaacgtttgccaacccaagaaacgcagcggctggcagtctgcggcaactggatgcc
aaagttaccgccaaacgagaactagatactttcatgtactacattcccgaatatgaaaaa
ctgggcgtcaagactcaggcccaggctttggataagatgcggcaattaggatttcacgtc
aatgaattcaatcgtgtcgtgcataatgaagcagaaatcaaggcctatatcgatgagtac
acggccaagcgcgatgatctgccatatggaattgacgggattgtcgaaaaagtcaacgat
ctcgccgttgaagaggcactgggcgcgacggttaaagtaccgcgctgggagattgcctat
aaattcccacctgaagagcaggcaaccgtagtcagagacatcgagtggacggttggtcga
acgggcaacgtcacgccgactgcagtgatggatccggttcagctggctgggacgacggtt
agccgggcttctctgcataatcccgactatctaaaagacaaggacattcgcctgggtgat
acggttctattgcataaggccggtgatatcattcctgagatctcacgtgttatcttaaat
aagcgtccggttgacagtcagccatatgagattccaacgctttgtccggtctgtcaatcc
aaactggttcacctggatgatgaggtagcgctgcgctgcatcaatccaatgtgtccggca
caggtaaaagaaggtctggttcattttgcctcacgcaatgccatgaacatcgaccatctg
ggaccaagagtaattgagcagctctgggatcgtcatttggttcatgatgttgccgatctg
tatcgtttaacctatgaccaattattaacattagataaatttggacccaaatcggctaat
aacctattgacatcgattgccaacagtcgcaataattctgttgagcgtctattgtttggc
ttgggcattcgtcatgtcggtgccaaggcggctcgcatcttagcccagcattttggctct
ctggcagcaataatagcagccgatgaggaatcgattgccgagatcaacacgattgggcca
acgattgccgacagtctgaaaaactattttgccaacgagcaggtgcaggaattgattcaa
gagctgcaggcggccggggtcaatctggaataccatggaccagcgccgatcgctcaagac
agcgcagcggccaaagaatggcagggcaagcgcgtggtcttgactggcaagctcaatgaa
atgacgcgcgatcaagccaagcaatggttggaagaacgcggtgccagcgtaaccggcagc
gtgtcgaaaaaaacagatttggtcatcgctggagaaaaggctggctccaagcttaccaag
gcccaggatctgggagtcgaggtctggaatgagagccgatttgctcaagcgatgaaggag
gattaa
DBGET
integrated database retrieval system
