Ligilactobacillus murinus: CPS94_01030
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Entry
CPS94_01030 CDS
T07549
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lmur
Ligilactobacillus murinus
Pathway
lmur03030
DNA replication
lmur03410
Base excision repair
lmur03420
Nucleotide excision repair
lmur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPS94_01030 (ligA)
03410 Base excision repair
CPS94_01030 (ligA)
03420 Nucleotide excision repair
CPS94_01030 (ligA)
03430 Mismatch repair
CPS94_01030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmur03032
]
CPS94_01030 (ligA)
03400 DNA repair and recombination proteins [BR:
lmur03400
]
CPS94_01030 (ligA)
Enzymes [BR:
lmur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPS94_01030 (ligA)
DNA replication proteins [BR:
lmur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPS94_01030 (ligA)
DNA repair and recombination proteins [BR:
lmur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPS94_01030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPS94_01030 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPS94_01030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPS94_01030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
BRCT_2
LysX_preATP_grasp
HHH
Motif
Other DBs
NCBI-ProteinID:
AWZ37605
UniProt:
A0AAD0L1L6
LinkDB
All DBs
Position
227244..229256
Genome browser
AA seq
670 aa
AA seq
DB search
MEAKTLEEVKDLRAQLNKWSHEYYVLDRPTVEDHVYDATYQRLVELETKYPELITDDSPT
RRVGGQVLSGFEKVEHEIPMLSLGDVFSKAELAEFKAKLEENVKTTFAYSCELKIDGLAI
SLVYKKGVFVKGSTRGNGIIGEDITENLKTIKAIPLRLSEPIDVEVRGECYMPKDSFLKL
NKAREEQGQTVFANPRNAAAGSLRQLDTKETAKRNLSVFMYYLMEPEKFGITTQSQALAQ
LKAWGFKVNEEAIVASEMSEIDAYIDEYHAKRAKLAYEIDGIVIKADPFAIHAEVGNTVK
VPRWAIAYKFPPDEQETIVREIEWTVGRTGVVTPTAVMDPVTLAGTVVSRASLHNPDYLK
QKDIRLGDTVKLHKAGDIIPEISEVVLAKRPASSEPYVIPKECPECGAKLVHLDGEVALR
CIDPQCPALLKESLTHFASRNAMNIDGLGPRIIEQLFAKKLIKDAAGLYNLTFDELLTLD
KFKEKSANNLLQAIEQSKANSLERLLFGLGIRHVGAKAAFILAQHFKTIHALKKATVEEI
VELDSIGETIADAVVTYFENEQVDLLLEEFATAGVNLTFLGQSAEELAKQTAADPLNGLT
VVLTGKLDKIKRAQAKQLLEAHGAKVTGSVSKKTDLLVAGHDAGSKLTKAQELGIKIIDE
DEFLRQTGGN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaagactttagaagaagtcaaagatctacgtgcgcaattgaataaatggagc
catgaatactatgtgttagatcgaccaacagtggaagatcatgtttatgatgctacctat
cagcgtttggtcgagcttgaaactaagtatcctgagcttataactgatgattcacctact
agacgtgtcggcggtcaagttttaagcggttttgagaaggtcgaacatgagatcccgatg
ctttcgctaggtgatgttttttcaaaagcagaactagcagaattcaaagcaaaattagag
gaaaatgtaaaaacgacttttgcgtatagctgtgaattaaagatcgatggtttagcgatc
tcgttagtttacaaaaaaggtgtctttgtcaaggggtcgacacgtggtaacgggatcatc
ggtgaagatatcacggaaaacttaaaaacgatcaaggcgatcccgttacgtttaagtgaa
ccgatcgacgttgaggtccgcggtgaatgctatatgcctaaagattcatttctaaaattg
aataaagctcgtgaagaacaaggccaaacagtctttgctaatccaagaaacgctgcggct
ggttcattacggcaattagataccaaagaaacagccaagcgtaatttaagtgtctttatg
tactacttgatggaacctgaaaaatttgggatcacgacccaaagtcaagctctagcgcaa
ttaaaagcatggggctttaaagtcaacgaagaagcgatcgtggctagcgaaatgtctgag
atcgatgcctatattgatgaatatcatgctaaacgggcaaagctagcttatgagatcgat
gggatcgtgatcaaagccgatccatttgcgatccatgctgaagttggaaatacagtcaaa
gttccccgttgggcgatcgcctataaatttccaccagacgagcaagaaacgatcgtccgt
gagatagaatggacggtggggcggactggagtggtgaccccaacggcagtgatggatcca
gtgaccttagcggggaccgtggtttcaagagcttccttacacaatcctgattatctaaaa
caaaaagatatccgcttaggtgatactgtcaaattacacaaagcaggtgacattattcca
gagatctcagaagttgtgttggctaaacgtccagcttccagtgaaccttatgtgatccca
aaagaatgtcctgaatgtggagcaaaactcgttcatttggatggcgaagttgcgttgcgg
tgtatcgatccgcagtgtcccgcactcttaaaagaaagtttgactcactttgcgtcgcga
aatgcgatgaatattgatggcttaggcccacggatcatcgaacaactcttcgccaagaaa
ttgatcaaagatgcggcggggctatataatttgacctttgatgaattattgacgctagat
aaattcaaagaaaaatcagctaataacctattacaagcgatcgaacagagtaaagctaat
tcattggagcgcttgttgtttggtttagggatccggcatgtaggagccaaagcagcattt
atcttggcccaacactttaagacgatccacgctctaaagaaagcaacagtagaagagatc
gtagaactcgactcgatcggtgaaacgatcgctgatgctgtggtgacatattttgaaaat
gaacaagtcgatctgttattggaagaatttgctactgctggtgttaatttaactttccta
ggtcaaagcgcagaagagctagctaaacaaacagccgctgatcccttaaatggtttgact
gtagtcttaacgggaaaactcgacaagatcaagcgggcgcaagctaaacagcttttggag
gcgcatggtgctaaagtaacagggagcgtttcaaaaaagaccgaccttttagttgcaggg
catgatgctggtagcaaattgactaaggcccaagaactaggaataaaaattattgatgaa
gatgaatttttacggcaaacaggaggcaattga
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integrated database retrieval system
