Lagopus muta (rock ptarmigan): 125684539
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Entry
125684539 CDS
T09141
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lmut04040
]
125684539 (SCN4A)
Ion channels [BR:
lmut04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125684539 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Protocadherin
Motif
Other DBs
NCBI-GeneID:
125684539
NCBI-ProteinID:
XP_048782694
LinkDB
All DBs
Position
25:3687032..3717798
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AA seq
1836 aa
AA seq
DB search
MAGLPHIPGPENLRPFTPASLAAIEQRMAEAKALKLKKQQVEMPEEEELKPSSDLEAGKN
LPLIYGDPPLELIGTPLEDLDPFYKDKKTFIVLNKGKSIFRFSATPALYLLGPFHPIRRG
AIKVLIHSLFSMFIMITILTNCVFMTMSNPPAWSKNVEYTFTGIYTFESLIKILSRGFCI
DDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVRWPPLNDTLMGDFGLGDTTLAN
ATLYSNFTDGIDGNFTGNSTFDFEAYINDEANFYFLEGALDALLCGNSSDAGKCPEGYVC
MKTGRNPNYGYTSYDTFSWAFLSLFRLMTQDFWENLFQLTLRAAGKTYMIFFVVVIFLGS
FYLINLILAVVAMAYAEQNDATMLEAQQKEEEFQQLMEQLKKHQEEQEKQLQDRQSSSSS
LQSSVAGKKSDSDLNSDQDKAKDCNGQLVPKVVLQRSATVIEFNPANEPEKSDSNHLTVG
NQDGPGLEKRVGSAISVISNTMEELEEAHQKCPSWWYKFAHMFLVWDCCYPWLKLKEFVK
LVVMDPFVDLGITICIVLNTLFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEMVLKLIAL
DPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKI
IGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYMECVCKISTDCTLPRWHMHDFFHSFL
IVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADSLAA
SDDDGEMNNLQIAIGRITRGIDFVKSSVLMLLRRLWKGKKVAPEEEQEPSKGDNSVLNHV
DSSPDPKPDYMDGVAGKEYLLMDELDHMNFINNPNLTVQVPIASEESDLYEETSTQSDTE
DAKNPLSSDNTSSLCSTVDYKPPLPEEEEVAEEAEESNEPEECFTEGCVKRFPCLHVDIT
SDRGKIWWNIRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQRKVIRTVLEYADK
VFSYIFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSLISLTANWLGYSELGAIKSLRT
LRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRCV
NTTTGDLFEISVVNNKSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIM
YAAVDSREIEEQPVYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDI
FMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKFQGMVFDFVTKQVFDITIMILICLNMVTM
MVETDDQSETKTDILYKINLVFIVIFTGECVLKMFALRYYYFTIGWNIFDFVVVILSIAG
IVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLF
LVMFIYSIFGMSNFAYVKKEAGIDDIFNFETFGNSIICLFQITTSAGWDGLLSPILNSGP
PDCDPNLENPGSSVKGNCGNPSIGIFFFCSYIIISFLIVVNMYIAIILENFNVATEESSE
PLCEDDFDMFYETWEKFDPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLITMDLPMVA
GDKIHCLDILFALTKEVLGDSGEMDALKDTMEEKFMAANPSKVSYEPITTTLKRKHEEVC
ATKIQRAFRRYLLRRSVKQASYMYRHSRDVEALIGDAPEKEGLIATKMHEMYGNSGTEAE
VGAAVDLAPVPSAETPSAPVEAKPAGGQRVVKESLV
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctgccgcacatcccgggccctgagaacctgcgccctttcacccccgcctcg
ctggctgccattgagcagcgcatggccgaggcaaaggcgctcaagctaaagaagcagcag
gtggagatgcctgaggaagaggagctcaagcccagcagtgacctggaggctggcaagaac
ctgcccctcatctatggggatccccccttggagctcatcgggacccccctggaggacctg
gaccctttctacaaggataagaagacattcatcgtcctcaacaaagggaagtccatcttc
cgcttctcggcaacgcctgcgctctacctgctggggcccttccaccccatccggagagga
gccatcaaagtgctcatccattcattattcagcatgttcatcatgatcaccattttaacc
aactgtgtgtttatgacgatgagcaaccccccggcgtggtccaagaacgtggaatacacc
ttcactggaatatacaccttcgagtccctcatcaagatcctgtccagaggtttctgcatc
gatgactttacattcctgcgcgacccgtggaattggctggacttcatggtcatctccatg
gcctacatcaccgagtttgtggacctggggaacatctctgctctcagaaccttccgtgtc
ctccgtgccttgaaaaccatcacggtgataccagggctgaagacgatcgtcggggcgctg
atccagtcggtgaagaagctctcggatgtcatgatcctcaccgtcttctgcctgagcgtc
ttcgccctcatcggcctgcagctcttcatggggaacctccggcacaagtgtgtgaggtgg
ccgcccctcaatgacactctgatgggggactttgggctgggcgacaccacgttggccaac
gcaacgctctacagcaacttcactgatggcatcgatggcaacttcacaggcaacagcacc
ttcgattttgaagcctacatcaacgacgaagcaaatttctactttctggagggagcgctc
gatgccctgctctgtgggaacagcagcgatgctgggaagtgcccagaggggtacgtgtgc
atgaagacgggcaggaaccccaactatggctacaccagctacgacaccttcagctgggct
ttcctctccctcttccgcctcatgacgcaggacttctgggagaacctcttccagctgacg
ctgcgtgcggcagggaaaacgtacatgatcttctttgtggtggtgatattcctgggttcc
ttctacctcatcaacctcatcctggctgtggtggccatggcctatgctgagcaaaacgat
gccaccatgctggaggcgcagcagaaggaagaggagttccagcagctcatggagcagctg
aagaagcaccaggaggagcaggagaagcagttgcaggacaggcagtccagcagcagctcc
ctgcagagcagcgtggctgggaagaagagcgactcggatctgaacagcgaccaggacaag
gcgaaggactgcaatgggcagctggtgcccaaggtcgtgctgcagcgctctgccacggtc
attgaattcaatccagccaatgagccagagaaatcagactccaaccacctcaccgtgggc
aaccaagatgggccagggctcgagaagagggtggggagtgccatcagtgtcatctccaac
accatggaagagctggaggaagctcaccagaagtgcccatcctggtggtacaaatttgcc
cacatgtttctggtgtgggactgctgctacccatggctgaagctgaaggaattcgtcaag
ctggtggtgatggaccccttcgtggacctgggcatcaccatctgcatcgtgctcaacaca
ctgttcatggccatggagcactaccccatgacagaggagtttgagaacgtgctgactgtg
gggaacctggtcttcacggggatcttcacagcagagatggtgctgaagctcatcgctctg
gacccctatgagtacttccagcagggctggaatatctttgacagcatcatcgtcacgttg
agcctggtggagctggggctggccaacgtgcaggggctctccgtgctgcgctccttccgc
ttgctgagagtcttcaaattggccaagtcttggcccaccctcaacatgctcatcaagatc
attggcaactcagtgggcgcgcttgggaatctgacactggtgctggccatcatcgtcttc
atcttcgccgtggtggggatgcagctctttgggaagagctacatggagtgtgtctgcaaa
atctccaccgactgcacgctgccccgctggcacatgcatgacttcttccactccttcctc
attgtcttccgcatcctctgcggtgaatggattgagaccatgtgggactgcatggaggtg
gccggccagaccatgtgcctcatcgtcttcatgatggtcatggtcatcgggaacctggtg
gtgctcaacctgttcttggctttgctgctgagctccttcagcgccgacagcctggcagcc
tctgatgacgacggcgagatgaacaacctgcagatcgccatcggccgcatcaccaggggc
atcgacttcgtgaagtcttctgtcctcatgctgctccgaaggctgtggaagggcaaaaag
gtggccccggaggaagagcaggagcccagcaaaggggacaactccgtgctgaaccacgtg
gatagcagcccggatcccaagccggattacatggacggagtggcggggaaggagtatttg
ctgatggacgagctggaccacatgaatttcatcaacaatcccaacctgaccgtgcaggtc
cccatcgcctcggaggagtccgacctctacgaggagacgagcactcagtctgacactgag
gatgccaagaaccccctttccagtgacaacacctcatccctgtgcagcaccgtggactac
aagccaccgctgcccgaggaggaggaggtggccgaagaggctgaagagagcaacgagccc
gaggagtgcttcaccgaaggctgtgtcaagaggtttccctgtctccatgtggacatcacc
agtgacagagggaagatctggtggaacatcaggaaaacctgcttccgcatcgtggagcac
gactggtttgagaccttcatcgtcttcatgatcctcctcagcagcggggcgctggccttt
gaggacatctacatcgagcagcgcaaggtgatccgcaccgtcctggagtacgctgacaag
gtcttctcctacatcttcgtcatcgagatgctgctcaagtgggtggcctacggcttcaag
gtctacttcaccaacgcctggtgctggctggacttcctcatcgtcgacgtctccctcatc
agcctgacagccaactggttgggatactctgagctgggagccatcaaatctctgcggaca
ctgagagcactgaggcctctgcgcgccctgtccagatttgaaggcatgagggtggtggta
aacgccttgctgggtgccattccctccatcatgaacgtcctgctggtctgcctcatcttc
tggctgatattcagcatcatgggggtgaacctcttcgcagggaagtactaccggtgcgtc
aacaccaccacgggggacctctttgagatcagtgtggtgaacaacaagagcgactgcatg
gctctgctgcacaccaacgaggtcagatgggtcaacgtcaaagtcaacttcgacaacgtg
ggcttgggatacctgtccttgctgcaggtggcgaccttcaaaggttggatggacatcatg
tacgccgctgtggactcacgtgagattgaagagcagccagtgtacgagatcaacctctac
atgtacatctactttgtcatcttcatcatctttggagccttcttcaccctcaacctcttc
atcggcgtcatcatcgacaacttcaaccagcagaagaaaaagtttggaggcaaagacatc
ttcatgacagaagagcagaagaaatactataatgccatgaagaagctcggctccaagaaa
ccccagaagcccatccccaggccctcgaacaagtttcaagggatggtgtttgactttgtt
accaagcaagtgtttgacataaccatcatgatcctgatttgtcttaacatggtgaccatg
atggtcgaaacagacgatcaaagcgagaccaaaacagacatcctctacaaaatcaacctg
gtcttcatcgtcatcttcactggagagtgtgtgctaaagatgtttgccttgcgctactac
tacttcaccatcggctggaacatctttgactttgtggtggtcatcctctccatcgcaggc
atcgtcctctcagacatcatagagaagtactttgtgtcacccacgctcttcagggtcatc
aggctggcgaggatcggccgcgtcctccggctcatccgaggcgctaaaggcatccggacg
ctgctcttcgccctcatgatgtccctccctgccctgttcaacatcggcctcctgctcttc
cttgtcatgttcatctactccatcttcgggatgtccaacttcgcctacgtaaagaaggag
gcggggattgacgacatcttcaacttcgagacttttgggaacagcatcatctgcctcttc
cagatcaccacgtcggcaggctgggatgggctgctcagcccgatcctcaacagcggtccc
cccgactgcgaccccaacctggagaatcctggcagctcagtaaagggcaactgcggcaat
ccgtccatcggcatcttcttcttctgcagctacatcatcatctccttcctcatcgtggtc
aacatgtacatcgccatcatcctggagaacttcaacgtggccacggaggagagcagcgag
cccctctgcgaggacgactttgatatgttttatgaaacctgggagaaatttgacccggac
gccacccagttcatcgcgtacagcaccttgtctgactttgtggacaccctgcaggagccg
ctcaaaatccccaagccaaacaagatcaagctgatcaccatggatttaccgatggttgcc
ggggacaaaatccactgcctggacatcctctttgccctgacaaaggaagtgttgggggac
tccggagagatggacgccttgaaggacaccatggaggagaagttcatggccgccaacccc
tcaaaggtctcctacgaacccatcaccaccactctgaagaggaaacacgaggaggtgtgc
gcaacgaaaatccagcgggcgtttcggaggtacctgctgaggcgctcggtcaagcaggca
tcctacatgtaccggcacagcagggatgtggaggcactgattggggacgcccctgagaag
gaaggtctgattgcaaccaaaatgcacgagatgtatgggaacagtgggaccgaggcagag
gtgggcgctgctgttgatctcgcacccgtcccaagcgcagagactccgagtgctcctgta
gaagcaaagccagcgggtgggcagcgcgtcgtgaaagagtcgttggtgtaa
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integrated database retrieval system
