Lagopus muta (rock ptarmigan): 125684604
Help
Entry
125684604 CDS
T09141
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03440
Homologous recombination
lmut03460
Fanconi anemia pathway
lmut04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125684604 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
125684604 (BRCA1)
03460 Fanconi anemia pathway
125684604 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lmut01009
]
125684604 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lmut04121
]
125684604 (BRCA1)
03036 Chromosome and associated proteins [BR:
lmut03036
]
125684604 (BRCA1)
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125684604 (BRCA1)
Enzymes [BR:
lmut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125684604 (BRCA1)
Protein phosphatases and associated proteins [BR:
lmut01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125684604 (BRCA1)
Ubiquitin system [BR:
lmut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125684604 (BRCA1)
Multi subunit type E3
BRCC complex
125684604 (BRCA1)
Chromosome and associated proteins [BR:
lmut03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
125684604 (BRCA1)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
125684604 (BRCA1)
BRCA1-A complex
125684604 (BRCA1)
BRCA1-B complex
125684604 (BRCA1)
BRCA1-C complex
125684604 (BRCA1)
BRCA complex
125684604 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
125684604 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
BRCT_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_6
BRCT_3
zf-Nse
RING_XB3-XBAT31
zf-RING_5
zf-RING_10
zf-MIZ
RTT107_BRCT_5
zf-ANAPC11
TRAF3_RING
zf-rbx1
Zf_2nd_IFT121
Motif
Other DBs
NCBI-GeneID:
125684604
NCBI-ProteinID:
XP_048782816
LinkDB
All DBs
Position
25:42816..64781
Genome browser
AA seq
1746 aa
AA seq
DB search
MDLSVIAIGDVQNVLSAMQKNLECPVCLDVIKEPVSTKCDHIFCRFCMFKLLSKKKKGVI
QCPLCKTEVTKRSLKENSRFKQLIEGLLEAISAFELDTGVKFLSSHFPKTPTEAASAELL
GNNRSVIQSKGFRNRKISAKENGQDSYTLQEANVDPQLTDNRVEERYLTSKKQKRGIGRG
VLIELGTDSSEELFMPASNTGRLEDKEELEEFKSAEKYGSSCNTQSLKLGAEEITLPDVI
GETDFLKEALSKKSMLNITEHVKSNHVNTIEGQSSPSNVFDADLLTEQCDEIGNASPLKN
NYTSFSNNAEEMDAEESLCSSKNQELDFEDGSESTLDKIKEQDICVPSVEDVEMYEPVTD
SLLEKELPVEKLLQLKIPHCPTLHEVSRKRLKQSIQKVNEWFSKSNEVLSSSSFQNDPSE
ATDASGEGDISLSDKDSCISEKTNPIVDSVEFVLFERNKRWPKQTTYSIKDKIFGKTYER
GRKSNPSTVLRDVLPATKKEDAAVEEECLNNSREARLKRKREPARVLQPEDFIEKKDLEE
ADRCPQGINSSLEGAEKRKCDGNSAVKENPLLEKIKVRMLTEFEEGGLQWKNAIEKVSDM
PFDGQLELSNSDQKSTKNACSAAKGCRRSTRTRCAIRLVVDRNPDSFGPDEPLIDSYPSS
EEPNKVDCEQRQVRRSRRLQLLSKETGKMRITKEARNSDNGPEGSVFGVERSVLVHNSQC
KDLRKQQDILNCTSLTDRNGADLVANGIQISPKNSADITKNRSLFNPTFSCQHSNFNSPS
LKAGSQEGEMLGRLFLLQSPSKTVLDTASILTEEKRSGSGTVFPQDKGCCSQNVPKDFRI
EKSPMAKNVSELTVEAEDSELDMQHLRNTFRSSKRQSFSLYPAPMKTCTTDDVESEKLNT
LCPDQVEKRHSKYFMTENLQEKKKTAENLSSVCEKFKTCESACVSPVSCSVSNAERVHAV
EHQEDILNVANHGNLATLVRVCAARNEGRNRPQEGEQESEKTLSADIGVESKLRLSPVGS
NRNLSDRSHAEERAFQRTDLNTVSETYFSSESNQVENAEVVDGKAPMQRFQPSPMVCPTA
CQQNPAEFNCRVTEKKISKKEESLIKGNEERVIQTVSTGLSEYLVREALEESLKVRSDFT
DLSETPDGLLCSDNDTEDSASFYVTNKKDTSAVFVKRSGAALVNIVNDSVVSCKPRSEGI
QRSRRRAQKLQSSDEESSEDEDLPCFQELMFGKSVSTPLQIKKQVTSVVQSSANPSMLPR
SECLNENNEQKTLEAALSNECVSPSQESECSVKLFSSQSNISEESVDGAQELRKTLTQMS
ARNKSKEALQSCSGGLKRRKNDSNDEYQEDPNMGANLGEASGYDSETSRVEDSHEPFSQG
EILSTQQKNAMQNNLKKLQEEMAVLEAVLKQHASQDTEVLPLCRELPYSSSGGTLGMEQM
RQETENASEHDSETKLSKAPVLPVLCRNVTSNPNSSSSSVKHPCPQTAQTNNSAVAQCDN
KSSVRVRESKRNVCFPTSVLHNAAGKENAASSGTTYRTEMSIVASGLNQNEHLMVQKFAR
KTQSTFSNHITDGTTHVIMKTDEELVCERTLKYFLGIAGRKWVVSYQWIIQSFKEGRILD
EENFEVKGDVINGRNHQGPKRARQSLAEKIFKDFEICCYGPFTDMTAGHLEWIVELCGAS
VVKQLHLFTHKVNSTAVVVVQPDAWMEGTSYEAIQQKNNVAVVTREWVLDSVACFECQEL
DAYLVS
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggacttgtcagtgattgccattggagatgtgcaaaatgtgctttcagccatgcagaag
aacttggagtgtccagtctgtttggatgtaataaaagagccagtctcaacaaaatgtgat
cacatattctgcaggttttgcatgtttaaactcctcagcaaaaagaaaaagggtgtaata
cagtgtcctctgtgtaagactgaagttaccaagagaagtctcaaagaaaattccagattt
aagcagctgattgaaggattgttagaagctatcagtgcatttgagcttgacactggagta
aaatttttaagcagtcattttcctaaaacacccacagaagctgctagtgccgagctcctg
ggtaataaccgttctgtcatccagagtaagggtttcagaaacaggaaaatatctgctaaa
gaaaatggacaagacagctataccttgcaggaagctaatgtggatccacagcttacagat
aacagagtcgaagagcgttacctaacaagcaaaaaacagaagcgtggcattggaagaggt
gtacttatagagcttggcactgattcctctgaagagctttttatgcctgcaagcaatact
ggcaggttagaagacaaagaagagctagaagaatttaagagtgctgagaagtatggaagt
tcttgcaatacacagtcactcaagctgggtgctgaagaaataactttaccggatgtgata
ggtgaaactgatttcttgaaggaagctttgagcaagaaaagcatgctgaacatcactgaa
catgtcaaatctaaccacgtaaatacaattgagggtcagagttctccttcaaatgttttt
gatgcagacctactcacagagcagtgtgatgaaataggtaatgccagtcccttaaagaat
aattacacatctttctctaataatgcagaagaaatggatgcagaggaatctctgtgcagt
agtaaaaaccaagagcttgactttgaagatggctcagaaagtactctggataaaataaaa
gagcaggatatttgtgtgccaagtgtggaagatgtagaaatgtatgaacccgtgactgat
tctttacttgaaaaagaacttcctgtggagaaactgcttcagctgaagatacctcactgt
cctaccctgcatgaggtctctagaaagagactgaagcaaagcattcagaaagtcaatgaa
tggttttcaaaaagcaatgaggttctatcttccagttcattccagaatgatccttctgaa
gcaactgatgcttcaggtgaaggagatatttctctatcagataaagattcatgtatttca
gagaagaccaaccctatagtagattctgtggaattcgtactgtttgaaagaaacaagaga
tggccaaaacaaacaacgtatagcatcaaagacaaaatatttgggaaaacatacgagaga
gggaggaaatcaaatccctctactgtcttgagagatgttttgcctgctacaaaaaaagaa
gatgcagctgttgaagaggagtgcttgaataattccagagaagccagactaaaacgaaaa
agggagcctgctcgtgtccttcagcctgaagacttcattgagaagaaagatctagaagag
gcagatagatgccctcagggtattaactccagccttgaaggtgctgagaagagaaaatgt
gatggaaattctgctgttaaagagaatcccctccttgaaaaaataaaggttaggatgcta
acagaatttgaggaaggagggttacagtggaaaaatgctatagaaaaggtgtcagacatg
ccctttgatggacagctggaactgagtaactctgatcagaagagcactaagaatgcatgt
tctgcagcaaaaggatgcagacgttcaactagaacaaggtgtgctatacgtttagtagtt
gacagaaatccagattcctttggtccagatgagccactgattgatagctatccaagcagt
gaagaaccaaacaaagttgattgtgagcaaagacaagtcagacgcagcaggaggcttcag
ctactttctaaagagacaggaaaaatgagaataactaaggaagcaagaaattctgacaat
ggcccagaagggtctgtctttggagttgaaaggagtgtgttagttcacaattcccagtgc
aaagacttgaggaagcagcaggatatactgaattgcacatcactcactgatcggaatggt
gctgatctggtagcaaatggaatacagattagtccgaagaattcagctgatataacgaaa
aacagaagtctcttcaatcctacgttttcttgtcagcattcaaattttaattccccttca
ctcaaagcaggttctcaagaaggggaaatgctaggtagacttttcctcctacagtctcct
tcaaagactgttctggacactgcttccatcctgactgaagagaagaggtctgggtcaggg
actgtttttccccaggacaaaggatgctgttcacagaatgttcccaaggacttcagaatt
gaaaagtcaccaatggctaaaaacgtttcagaattgaccgtggaagctgaagacagtgag
ttagacatgcaacatctgcgaaatacatttaggagttcaaaacggcagtcttttagtctt
tatcctgctcccatgaagacatgtaccacagatgatgttgaatctgaaaaattgaatact
ctgtgtcctgatcaagtagaaaaaaggcatagtaaatattttatgacagaaaacttacaa
gaaaagaaaaaaactgcggaaaatttgagtagtgtttgtgagaagtttaagacatgtgaa
tctgcttgtgttagtcctgtgtcgtgctctgtcagcaatgctgaacgtgtgcatgctgtg
gagcatcaagaagatattttaaatgttgcaaatcatgggaatctggcgacactagtaaga
gtgtgtgctgctaggaatgaaggcagaaacagaccacaagagggagagcaggagagtgaa
aagacattgtcagctgacataggggtagaaagcaaattgagactgagtccagttggaagc
aatagaaatctcagtgatcggagtcatgcagaagagcgtgctttccaaagaacagacctg
aacacagtcagtgaaacatacttcagttcagaaagcaatcaagtggaaaatgctgaagtt
gttgatggcaaagcaccaatgcaacgttttcagcccagtccaatggtttgccctacagct
tgtcaacaaaatccagctgagttcaactgcagagtcactgaaaaaaaaattagcaaaaaa
gaggaaagtctgataaagggcaatgaagagcgagtaatccaaactgtcagcacagggttg
tcagagtatttagttagggaggcactagaagaatctcttaaagtccgcagtgattttacg
gatctgtctgaaactcctgatggcttactgtgttctgacaatgatactgaagatagtgcc
agtttttatgtaactaataagaaagacacatctgctgtgtttgtaaaaagaagcggtgct
gccctggtgaacatagtaaatgattcagttgttagctgtaagccaagatctgaaggtatt
cagaggtctcggagaagagcccagaaactgcaatcttcagatgaagaatctagtgaggat
gaagatttaccatgttttcaggaattaatgttcggcaaatcagtaagcacacctttgcag
atcaaaaaacaggtgacatctgtggtacagtcttcagcaaatcccagcatgttgcctcgc
agtgaatgtcttaatgaaaataatgaacagaaaacacttgaagctgccctaagcaatgag
tgtgtttcaccaagccaggagtcagaatgctctgtgaaattattttcttcccagtctaac
atatctgaagaatcagttgatggagcacaggagctgaggaagactttaacacaaatgagc
gccagaaataagagtaaggaagctcttcaaagttgcagtggagggctgaagagaagaaaa
aatgactccaacgatgagtaccaagaagatccaaatatgggggcaaacctaggtgaagca
tctggatatgacagtgaaacaagtcgtgtagaggattcacatgaaccattttctcagggt
gaaattctttctacacagcagaagaatgctatgcagaataacctaaaaaagctacaagaa
gaaatggctgtgcttgaagcagtgctaaagcagcatgcaagtcaggacactgaggtattg
cccttatgtagagaactgccatattccagtagtggaggaacgcttggaatggagcagatg
agacaagaaacggaaaatgcatctgagcatgactctgagaccaagctaagtaaggcacct
gttttaccagttctctgcagaaatgtgaccagcaatccaaatagctcttcctcctccgta
aagcacccttgccctcaaactgcacaaacaaataattctgctgtagctcagtgtgataac
aaaagcagtgttcgagtacgtgaatcaaagagaaatgtatgttttcctacatctgtattg
cacaatgcagctgggaaagaaaatgctgcaagttcaggtacaacttacaggacagaaatg
tcaattgtggcatccggtctgaaccaaaatgaacatttgatggtccagaagtttgccaga
aaaactcagagcactttctctaatcacattactgatggaacgacccatgtcataatgaaa
acagatgaggagctggtatgtgaacggacattgaagtacttcctgggtatcgcaggaaga
aaatgggtagttagttaccagtggataattcagtcttttaaagaaggcaggatactggat
gaggagaactttgaagttaaaggagatgtaatcaatggcagaaaccaccagggtcctaag
agggctaggcaatctctcgctgaaaagatctttaaagacttcgagatctgctgctatgga
cctttcactgatatgactgcaggacatttagagtggatagtggagctttgtggtgcctct
gtagtgaaacaacttcatctgttcacgcacaaagtaaattctactgctgttgttgttgtg
cagccagatgcttggatggaaggcacaagttatgaagcaatccagcaaaagaacaatgtt
gccgtggtgactcgagagtgggtgttagacagtgttgcttgctttgagtgtcaggagttg
gacgcttaccttgtgtcctga
DBGET
integrated database retrieval system
